Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata

N Mongiardino Koch, JA Gauthier - PLoS One, 2018 - journals.plos.org
Squamate reptiles are a major component of vertebrate biodiversity whose crown-clade
traces its origin to a narrow window of time in the Mesozoic during which the main subclades …

Integrated analyses resolve conflicts over squamate reptile phylogeny and reveal unexpected placements for fossil taxa

TW Reeder, TM Townsend, DG Mulcahy, BP Noonan… - PLOS …, 2015 - journals.plos.org
Squamate reptiles (lizards and snakes) are a pivotal group whose relationships have
become increasingly controversial. Squamates include> 9000 species, making them the …

Interrogating genomic-scale data for Squamata (lizards, snakes, and amphisbaenians) shows no support for key traditional morphological relationships

FT Burbrink, FG Grazziotin, RA Pyron… - Systematic …, 2020 - academic.oup.com
Genomics is narrowing uncertainty in the phylogenetic structure for many amniote groups.
For one of the most diverse and species-rich groups, the squamate reptiles (lizards, snakes …

Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species

JJ Wiens, CR Hutter, DG Mulcahy… - Biology …, 2012 - royalsocietypublishing.org
Squamate reptiles (lizards and snakes) are one of the most diverse groups of terrestrial
vertebrates. Recent molecular analyses have suggested a very different squamate …

Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa

JJ Wiens, CA Kuczynski, T Townsend… - Systematic …, 2010 - academic.oup.com
Molecular data offer great potential to resolve the phylogeny of living taxa but can molecular
data improve our understanding of relationships of fossil taxa? Simulations suggest that this …

Effect of taxon sampling on recovering the phylogeny of squamate reptiles based on complete mitochondrial genome and nuclear gene sequence data

EM Albert, D San Mauro, M García-París, L Rüber… - Gene, 2009 - Elsevier
The complete nucleotide sequences of the mitochondrial (mt) genomes of three species of
squamate lizards: Blanus cinereus (Amphisbaenidae), Anguis fragilis (Anguidae), and …

[HTML][HTML] Squamate phylogeny, taxon sampling, and data congruence

MSY Lee - Organisms Diversity & Evolution, 2005 - Elsevier
To investigate the affinities of snakes, amphisbaenians and dibamids, the phylogenetic
relationships among the major lineages (families) of extinct and extant squamates are …

A combined evidence phylogenetic analysis of Anguimorpha (Reptilia: Squamata)

JL Conrad, JC Ast, S Montanari, MA Norell - Cladistics, 2011 - Wiley Online Library
Anguimorpha is a clade of limbed and limbless squamates with ca. 196 extant species and a
known fossil record spanning the past 130 million years. Morphology‐based and molecule …

Comparing likelihood ratios to understand genome-wide variation in phylogenetic support

GG Mount, JM Brown - Systematic Biology, 2022 - academic.oup.com
Genomic data have only sometimes brought resolution to the tree of life. Large
phylogenomic studies can reach conflicting conclusions about important relationships, with …

A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

RA Pyron, FT Burbrink, JJ Wiens - BMC evolutionary biology, 2013 - Springer
Background The extant squamates (> 9400 known species of lizards and snakes) are one of
the most diverse and conspicuous radiations of terrestrial vertebrates, but no studies have …