In vitro protein ubiquitination assay

Q Zhao, L Liu, Q Xie - Plant Signalling Networks: Methods and Protocols, 2012 - Springer
Ubiquitination is one of the most important posttranslational modifications in all eukaryote
organisms. Ubiquitin-activating enzyme (E1), ubiquitin-conjugating enzyme (E2), and …

Plant ubiquitin ligases as signaling hubs

N Shabek, N Zheng - Nature structural & molecular biology, 2014 - nature.com
The past decade has witnessed an explosion in the identification of ubiquitin-ligase
complexes as the missing receptors for important small-molecule hormones regulating plant …

Cullin-containing E3 ubiquitin ligases in plant development

C Schwechheimer, LIAC Villalobos - Current opinion in plant biology, 2004 - Elsevier
In eukaryotes, the ubiquitin–proteasome system participates in the control of signal
transduction events by selectively eliminating regulatory proteins. E3 ubiquitin ligases …

Classification and interaction modes of 40 rice E2 ubiquitin-conjugating enzymes with 17 rice ARM-U-box E3 ubiquitin ligases

H Bae, WT Kim - Biochemical and biophysical research communications, 2014 - Elsevier
Rice, a monocot model crop, contains at least 48 putative E2 ubiquitin (Ub)-conjugating
enzymes. Based on homology comparisons with 40 Arabidopsis E2 proteins and 35 human …

Functional Analysis of the RING-Type Ubiquitin Ligase Family of Arabidopsis

SL Stone, H Hauksdóttir, A Troy, J Herschleb… - Plant …, 2005 - academic.oup.com
Abstract Approximately 5% of the Arabidopsis (Arabidopsis thaliana) proteome is predicted
to be involved in the ubiquitination/26S proteasome pathway. The majority of these …

Identification of ubiquitinated proteins in Arabidopsis

C Manzano, Z Abraham, G López-Torrejón… - Plant molecular …, 2008 - Springer
Ubiquitin (Ub) is a small peptide that is covalently attached to proteins in a posttranslational
reaction. Ubiquitination is a precise regulatory system that is present in all eukaryotic …

Harnessing the ubiquitin code to respond to environmental cues

B Orosa-Puente, SH Spoel - Essays in biochemistry, 2022 - portlandpress.com
Ubiquitination is an essential post-translational signal that allows cells to adapt and respond
to environmental stimuli. Substrate modifications range from a single ubiquitin molecule to …

In vivo ubiquitination assay by agroinfiltration

L Liu, Q Zhao, Q Xie - Plant Signalling Networks: Methods and Protocols, 2012 - Springer
The ubiquitination/proteasome system is involved in nearly all plant signaling processes.
Many signaling components are degraded by the 26S proteasome upon ubiquitination by …

Biochemical function of typical and variant Arabidopsis thaliana U-box E3 ubiquitin-protein ligases

J Wiborg, C O'Shea, K Skriver - Biochemical Journal, 2008 - portlandpress.com
The variance of the U-box domain in 64 Arabidopsis thaliana (thale cress) E3s (ubiquitin-
protein ligases) was used to examine the interactions between E3s and E2s (ubiquitin …

A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family

Y Mudgil, SH Shiu, SL Stone, JN Salt… - Plant physiology, 2004 - academic.oup.com
The Arabidopsis genome was searched to identify predicted proteins containing armadillo
(ARM) repeats, a motif known to mediate protein-protein interactions in a number of different …