Specific Recognition of DNA by Integration Host Factor: GLUTAMIC ACID 44 OF THE β-SUBUNIT SPECIFIES THE DISCRIMINATION OF AT: A FROM AN A: T BASE …
EK Read, RI Gumport, JF Gardner - Journal of Biological Chemistry, 2000 - ASBMB
Integration host factor (IHF) is a protein that binds to the H′ site of bacteriophage λ with
sequence specificity. Genetic experiments implicated amino acid residue Glu 44 of the β …
sequence specificity. Genetic experiments implicated amino acid residue Glu 44 of the β …
[HTML][HTML] Structural interplay between DNA-shape protein recognition and supercoiling: the case of IHF
The integration host factor (IHF) is a prominent example of indirect readout as it imposes one
of the strongest bends on relaxed linear DNA. However, the relation between IHF and …
of the strongest bends on relaxed linear DNA. However, the relation between IHF and …
Architectural elements in nucleoprotein complexes: interchangeability of specific and non‐specific DNA binding proteins.
AM Segall, SD Goodman, HA Nash - The EMBO journal, 1994 - embopress.org
Integration host factor (IHF) is required in lambda site‐specific recombination to deform the
DNA substrates into conformations active for recombination. HU, a homolog of IHF, can also …
DNA substrates into conformations active for recombination. HU, a homolog of IHF, can also …
Mapping the transition state for DNA bending by IHF
P Vivas, Y Velmurugu, SV Kuznetsov, PA Rice… - Journal of molecular …, 2012 - Elsevier
How DNA-bending proteins recognize their specific sites on DNA remains elusive,
particularly for proteins that use indirect readout, which relies on sequence-dependent …
particularly for proteins that use indirect readout, which relies on sequence-dependent …
In vitro integration of human immunodeficiency virus type 1 cDNA into targets containing protein-induced bends.
YC Bor, FD Bushman, LE Orgel - Proceedings of the …, 1995 - National Acad Sciences
Integration of human immunodeficiency virus type 1 cDNA into a target DNA can be strongly
influenced by the conformation of the target. For example, integration in vitro is sometimes …
influenced by the conformation of the target. For example, integration in vitro is sometimes …
Synaptic complex formation of two retrovirus DNA attachment sites by integrase: a fluorescence energy transfer study
S Bera, AC Vora, R Chiu, T Heyduk… - Biochemistry, 2005 - ACS Publications
The integration of retroviral DNA by the viral integrase (IN) into the host genome occurs via
assembled preintegration complexes (PIC). We investigated this assembly process using …
assembled preintegration complexes (PIC). We investigated this assembly process using …
FRET analysis reveals distinct conformations of IN tetramers in the presence of viral DNA or LEDGF/p75
JJ Kessl, M Li, M Ignatov, N Shkriabai… - Nucleic acids …, 2011 - academic.oup.com
A tetramer of HIV-1 integrase (IN) stably associates with the viral DNA ends to form a fully
functional concerted integration intermediate. LEDGF/p75, a key cellular binding partner of …
functional concerted integration intermediate. LEDGF/p75, a key cellular binding partner of …
The dissolution of double Holliday junctions
AH Bizard, ID Hickson - Cold Spring Harbor perspectives …, 2014 - cshperspectives.cshlp.org
Double Holliday junctions (dHJS) are important intermediates of homologous
recombination. The separate junctions can each be cleaved by DNA structure-selective …
recombination. The separate junctions can each be cleaved by DNA structure-selective …
Holliday junction resolution is modulated by archaeal chromatin components in vitro
M Kvaratskhelia, BN Wardleworth, CS Bond… - Journal of Biological …, 2002 - ASBMB
The Holliday junction-resolving enzyme Hjc is conserved in the archaea and probably plays
a role analogous to that ofEscherichia coli RuvC in the pathway of homologous …
a role analogous to that ofEscherichia coli RuvC in the pathway of homologous …
[PDF][PDF] Mechanical constraints on Hin subunit rotation imposed by the Fis/enhancer system and DNA supercoiling during site-specific recombination
G Dhar, JK Heiss, RC Johnson - Molecular cell, 2009 - cell.com
Hin, a member of the serine family of site-specific recombinases, regulates gene expression
by inverting a DNA segment. DNA inversion requires assembly of an invertasome complex …
by inverting a DNA segment. DNA inversion requires assembly of an invertasome complex …