[HTML][HTML] Application of Bayesian genomic prediction methods to genome-wide association analyses

A Wolc, JCM Dekkers - Genetics Selection Evolution, 2022 - Springer
Background Bayesian genomic prediction methods were developed to simultaneously fit all
genotyped markers to a set of available phenotypes for prediction of breeding values for …

Graph-based data selection for the construction of genomic prediction models

S Maenhout, B De Baets, G Haesaert - Genetics, 2010 - academic.oup.com
Efficient genomic selection in animals or crops requires the accurate prediction of the
agronomic performance of individuals from their high-density molecular marker profiles …

Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize

TA Schrag, M Westhues, W Schipprack, F Seifert… - Genetics, 2018 - academic.oup.com
The ability to predict the agronomic performance of single-crosses with high precision is
essential for selecting superior candidates for hybrid breeding. With recent technological …

Genomic predictability of interconnected biparental maize populations

C Riedelsheimer, JB Endelman, M Stange… - Genetics, 2013 - academic.oup.com
Intense structuring of plant breeding populations challenges the design of the training set
(TS) in genomic selection (GS). An important open question is how the TS should be …

Evaluation of genome-wide selection efficiency in maize nested association mapping populations

Z Guo, DM Tucker, J Lu, V Kishore, G Gay - Theoretical and Applied …, 2012 - Springer
In comparison to conventional marker-assisted selection (MAS), which utilizes only a subset
of genetic markers associated with a trait to predict breeding values (BVs), genome-wide …

Genome-enabled prediction using the BLR (Bayesian Linear Regression) R-package

G de Los Campos, P Perez, AI Vazquez… - Genome-wide association …, 2013 - Springer
The BLR (Bayesian linear regression) package of R implements several Bayesian
regression models for continuous traits. The package was originally developed for …

Genome-wide association studies to dissect the genetic architecture of yieldrelated traits in maize and the genetic basis of heterosis

J Yang - 2014 - search.proquest.com
This dissertation includes a general introduction (Chapter 1), three journal manuscripts
(Chapters 2 to 4) and a section of general conclusions (Chapter 5). The paper in Chapter 2 …

Genetic diversity, linkage disequilibrium and association mapping

A Rafalski, E Ananiev - Handbook of maize: genetics and genomics, 2009 - Springer
Maize, at all levels of resolution, is one of the most diverse crop species. Large insertions
and deletions are common between maize inbreds, and include tandem repeat clusters …

Adding genetically distant individuals to training populations reduces genomic prediction accuracy in barley

AJ Lorenz, KP Smith - Crop science, 2015 - Wiley Online Library
One of the most important factors affecting genomic prediction accuracy appears to be
training population (TP) composition. The objective of this study was to evaluate the effect of …

[HTML][HTML] Multibreed genomic prediction using multitrait genomic residual maximum likelihood and multitask Bayesian variable selection

MPL Calus, ME Goddard, YCJ Wientjes… - Journal of dairy …, 2018 - Elsevier
Genomic prediction is applicable to individuals of different breeds. Empirical results to date,
however, show limited benefits in using information on multiple breeds in the context of …