Systems biology approaches for understanding cellular mechanisms of immunity in lymph nodes during infection

HP Mirsky, MJ Miller, JJ Linderman… - Journal of theoretical …, 2011 - Elsevier
Adaptive immunity is initiated in secondary lymphoid tissues when naive T cells recognize
foreign antigen presented as MHC-bound peptide on the surface of dendritic cells. Only a …

Predicting lymph node output efficiency using systems biology

C Gong, JT Mattila, M Miller, JAL Flynn… - Journal of theoretical …, 2013 - Elsevier
Dendritic cells (DCs) capture pathogens and foreign antigen (Ag) in peripheral tissues and
migrate to secondary lymphoid tissues, such as lymph nodes (LNs), where they present …

Mathematical modeling of the immune system in homeostasis, infection and disease

G Bocharov, V Volpert, B Ludewig… - Frontiers in …, 2020 - frontiersin.org
The immune system is a dynamic and multi-level biological system that protects host
organisms against invading pathogens and tumor development, and plays an active role in …

A comparison of random vs. chemotaxis-driven contacts of T cells with dendritic cells during repertoire scanning

T Riggs, A Walts, N Perry, L Bickle, JN Lynch… - Journal of theoretical …, 2008 - Elsevier
Generating adaptive immunity after infection or immunization requires physical interactions
within a lymph node (LN) T-zone between antigen-bearing dendritic cells (DCs) that arrive …

New tools for immunologists: models of lymph node function from cells to tissues

T Ozulumba, AN Montalbine… - Frontiers in …, 2023 - frontiersin.org
The lymph node is a highly structured organ that mediates the body's adaptive immune
response to antigens and other foreign particles. Central to its function is the distinct spatial …

Imaging immunity in lymph nodes: Past, present and future

J Butler, A Sawtell, S Jarrett, J Cosgrove, R Leigh… - Biophysics of …, 2016 - Springer
Immune responses occur as a result of stochastic interactions between a plethora of different
cell types and molecules that regulate the migration and function of innate and adaptive …

Mechanistic models of cellular signaling, cytokine crosstalk, and cell-cell communication in immunology

M Meier-Schellersheim, R Varma… - Frontiers in …, 2019 - frontiersin.org
The cells of the immune system respond to a great variety of different signals that frequently
reach them simultaneously. Computational models of signaling pathways and cellular …

Modeling regulation mechanisms in the immune system

PS Kim, PP Lee, D Levy - Journal of theoretical biology, 2007 - Elsevier
We develop a mathematical framework for modeling regulatory mechanisms in the immune
system. The model describes dynamics of key components of the immune network within …

Agent‐based simulation of T‐cell activation and proliferation within a lymph node

G Bogle, PR Dunbar - Immunology and cell biology, 2010 - Wiley Online Library
Recent intravital microscopy experiments have revealed the complex behavior of T cells
within lymph nodes. Modeling T‐cell responses in lymph nodes now requires integration of …

Integrative computational modeling of the lymph node stromal cell landscape

M Novkovic, L Onder, HW Cheng, G Bocharov… - Frontiers in …, 2018 - frontiersin.org
Adaptive immune responses develop in secondary lymphoid organs such as lymph nodes
(LNs) in a well-coordinated series of interactions between migrating immune cells and …