Genomic prediction of complex human traits: relatedness, trait architecture and predictive meta-models
A Spiliopoulou, R Nagy, ML Bermingham… - Human molecular …, 2015 - academic.oup.com
We explore the prediction of individuals' phenotypes for complex traits using genomic data.
We compare several widely used prediction models, including Ridge Regression, LASSO …
We compare several widely used prediction models, including Ridge Regression, LASSO …
Genetic architecture of complex traits and disease risk predictors
Genomic prediction of complex human traits (eg, height, cognitive ability, bone density) and
disease risks (eg, breast cancer, diabetes, heart disease, atrial fibrillation) has advanced …
disease risks (eg, breast cancer, diabetes, heart disease, atrial fibrillation) has advanced …
Beyond missing heritability: prediction of complex traits
R Makowsky, NM Pajewski, YC Klimentidis… - PLoS …, 2011 - journals.plos.org
Despite rapid advances in genomic technology, our ability to account for phenotypic
variation using genetic information remains limited for many traits. This has unfortunately …
variation using genetic information remains limited for many traits. This has unfortunately …
Projecting the performance of risk prediction based on polygenic analyses of genome-wide association studies
N Chatterjee, B Wheeler, J Sampson, P Hartge… - Nature …, 2013 - nature.com
We report a new method to estimate the predictive performance of polygenic models for risk
prediction and assess predictive performance for ten complex traits or common diseases …
prediction and assess predictive performance for ten complex traits or common diseases …
Will big data close the missing heritability gap?
Modern biobanks that collect genotype-phenotype information from hundreds of thousands
of individuals bring unprecedented opportunities for genomic... Despite the important …
of individuals bring unprecedented opportunities for genomic... Despite the important …
Application of high-dimensional feature selection: evaluation for genomic prediction in man
ML Bermingham, R Pong-Wong, A Spiliopoulou… - Scientific reports, 2015 - nature.com
In this study, we investigated the effect of five feature selection approaches on the
performance of a mixed model (G-BLUP) and a Bayesian (Bayes C) prediction method. We …
performance of a mixed model (G-BLUP) and a Bayesian (Bayes C) prediction method. We …
A machine-learning heuristic to improve gene score prediction of polygenic traits
Abstract Machine-learning techniques have helped solve a broad range of prediction
problems, yet are not widely used to build polygenic risk scores for the prediction of complex …
problems, yet are not widely used to build polygenic risk scores for the prediction of complex …
Improved genetic prediction of complex traits from individual-level data or summary statistics
Most existing tools for constructing genetic prediction models begin with the assumption that
all genetic variants contribute equally towards the phenotype. However, this represents a …
all genetic variants contribute equally towards the phenotype. However, this represents a …
Negative selection on complex traits limits phenotype prediction accuracy between populations
A Durvasula, KE Lohmueller - The American Journal of Human Genetics, 2021 - cell.com
Phenotype prediction is a key goal for medical genetics. Unfortunately, most genome-wide
association studies are done in European populations, which reduces the accuracy of …
association studies are done in European populations, which reduces the accuracy of …
Accurate genomic prediction of human height
Hsu et al. used advanced methods from machine learning to analyze almost half a million
genomes. They produced, for the first time, accurate genomic predictors for complex traits …
genomes. They produced, for the first time, accurate genomic predictors for complex traits …