Microbiome networks: a systems framework for identifying candidate microbial assemblages for disease management

R Poudel, A Jumpponen, DC Schlatter… - …, 2016 - Am Phytopath Society
Network models of soil and plant microbiomes provide new opportunities for enhancing
disease management, but also challenges for interpretation. We present a framework for …

Structural equation modeling of a winnowed soil microbiome identifies how invasive plants re-structure microbial networks

SD Mamet, E Redlick, M Brabant, EG Lamb… - The ISME …, 2019 - academic.oup.com
The development of microbial networks is central to ecosystem functioning and is the
hallmark of complex natural systems. Characterizing network development over time and …

[HTML][HTML] Establishing causality: opportunities of synthetic communities for plant microbiome research

JA Vorholt, C Vogel, CI Carlström, DB Müller - Cell host & microbe, 2017 - cell.com
Plant microbiome research highlights the importance of indigenous microbial communities
for host phenotypes such as growth and health. It aims to discover the molecular basis by …

Greater than the sum of their parts: characterizing plant microbiomes at the community-level

SL Lebeis - Current opinion in plant biology, 2015 - Elsevier
Highlights•Each plant microbiome type differs predictably with its surrounding
environment.•While most soil microbes are dormant, the bulk of rhizospheric microbes are …

[HTML][HTML] Microbial interactions within the plant holobiont

MA Hassani, P Durán, S Hacquard - Microbiome, 2018 - Springer
Since the colonization of land by ancestral plant lineages 450 million years ago, plants and
their associated microbes have been interacting with each other, forming an assemblage of …

Seasonal community succession of the phyllosphere microbiome

JK Copeland, L Yuan, M Layeghifard… - Molecular Plant …, 2015 - Am Phytopath Society
The leaf microbiome is influenced by both biotic and abiotic factors. Currently, we know little
about the relative importance of these factors in determining microbiota composition and …

Assessment and management of soil microbial community structure for disease suppression

M Mazzola - Annu. Rev. Phytopathol., 2004 - annualreviews.org
▪ Abstract Identification of the biological properties contributing to the function of suppressive
soils is a necessary first step to the management of such systems for use in the control of …

[HTML][HTML] The nexus between plant and plant microbiome: revelation of the networking strategies

OO Babalola, AE Fadiji, BJ Enagbonma… - Frontiers in …, 2020 - frontiersin.org
The diversity of plant-associated microbes is enormous and complex. These microbiomes
are structured and form complex interconnected microbial networks that are important in …

[HTML][HTML] The soil-borne identity and microbiome-assisted agriculture: looking back to the future

PAHM Bakker, RL Berendsen, JA Van Pelt, G Vismans… - Molecular Plant, 2020 - cell.com
Looking forward includes looking back every now and then. In 2007, David Weller looked
back at 30 years of biocontrol of soil-borne pathogens by Pseudomonas and signified that …

[HTML][HTML] Network analysis infers the wilt pathogen invasion associated with non-detrimental bacteria

Q Hu, L Tan, S Gu, Y Xiao, X Xiong, W Zeng… - npj Biofilms and …, 2020 - nature.com
The microbiota colonizing the root endophytic compartment and surrounding rhizosphere
soils contribute to plant growth and health. However, the key members of plant soil and …