Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …

Contemporary tools for regulating gene expression in bacteria

R Kent, N Dixon - Trends in biotechnology, 2020 - cell.com
Insights from novel mechanistic paradigms in gene expression control have led to the
development of new gene expression systems for bioproduction, control, and sensing …

Dissecting specific and global transcriptional regulation of bacterial gene expression

L Gerosa, K Kochanowski, M Heinemann… - Molecular systems …, 2013 - embopress.org
Gene expression is regulated by specific transcriptional circuits but also by the global
expression machinery as a function of growth. Simultaneous specific and global regulation …

Redefining fundamental concepts of transcription initiation in bacteria

C Mejía-Almonte, SJW Busby, JT Wade… - Nature Reviews …, 2020 - nature.com
Despite enormous progress in understanding the fundamentals of bacterial gene regulation,
our knowledge remains limited when compared with the number of bacterial genomes and …

Transcription control engineering and applications in synthetic biology

MD Engstrom, BF Pfleger - Synthetic and systems biotechnology, 2017 - Elsevier
In synthetic biology, researchers assemble biological components in new ways to produce
systems with practical applications. One of these practical applications is control of the flow …

Metagenomic mining of regulatory elements enables programmable species-selective gene expression

NI Johns, ALC Gomes, SS Yim, A Yang… - Nature …, 2018 - nature.com
Robust and predictably performing synthetic circuits rely on the use of well-characterized
regulatory parts across different genetic backgrounds and environmental contexts. Here we …

Overloaded and stressed: whole-cell considerations for bacterial synthetic biology

O Borkowski, F Ceroni, GB Stan, T Ellis - Current opinion in microbiology, 2016 - Elsevier
Highlights•Predictability and robustness are major challenges for synthetic
biology.•Engineering bacteria requires putting synthetic constructs into growing host …

A portable expression resource for engineering cross-species genetic circuits and pathways

M Kushwaha, HM Salis - Nature communications, 2015 - nature.com
Genetic circuits and metabolic pathways can be reengineered to allow organisms to process
signals and manufacture useful chemicals. However, their functions currently rely on …

[PDF][PDF] Determination of the gene regulatory network of a genome-reduced bacterium highlights alternative regulation independent of transcription factors

E Yus, V Llorens-Rico, S Martinez, C Gallo, H Eilers… - Cell Systems, 2019 - cell.com
Here, we determined the relative importance of different transcriptional mechanisms in the
genome-reduced bacterium Mycoplasma pneumoniae, by employing an array of …

Persistence and plasticity in bacterial gene regulation

LA Baumgart, JE Lee, A Salamov, DJ Dilworth, H Na… - Nature …, 2021 - nature.com
Organisms orchestrate cellular functions through transcription factor (TF) interactions with
their target genes, although these regulatory relationships are largely unknown in most …