Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology
I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …
Contemporary tools for regulating gene expression in bacteria
Insights from novel mechanistic paradigms in gene expression control have led to the
development of new gene expression systems for bioproduction, control, and sensing …
development of new gene expression systems for bioproduction, control, and sensing …
Dissecting specific and global transcriptional regulation of bacterial gene expression
Gene expression is regulated by specific transcriptional circuits but also by the global
expression machinery as a function of growth. Simultaneous specific and global regulation …
expression machinery as a function of growth. Simultaneous specific and global regulation …
Redefining fundamental concepts of transcription initiation in bacteria
Despite enormous progress in understanding the fundamentals of bacterial gene regulation,
our knowledge remains limited when compared with the number of bacterial genomes and …
our knowledge remains limited when compared with the number of bacterial genomes and …
Transcription control engineering and applications in synthetic biology
MD Engstrom, BF Pfleger - Synthetic and systems biotechnology, 2017 - Elsevier
In synthetic biology, researchers assemble biological components in new ways to produce
systems with practical applications. One of these practical applications is control of the flow …
systems with practical applications. One of these practical applications is control of the flow …
Metagenomic mining of regulatory elements enables programmable species-selective gene expression
Robust and predictably performing synthetic circuits rely on the use of well-characterized
regulatory parts across different genetic backgrounds and environmental contexts. Here we …
regulatory parts across different genetic backgrounds and environmental contexts. Here we …
Overloaded and stressed: whole-cell considerations for bacterial synthetic biology
Highlights•Predictability and robustness are major challenges for synthetic
biology.•Engineering bacteria requires putting synthetic constructs into growing host …
biology.•Engineering bacteria requires putting synthetic constructs into growing host …
A portable expression resource for engineering cross-species genetic circuits and pathways
M Kushwaha, HM Salis - Nature communications, 2015 - nature.com
Genetic circuits and metabolic pathways can be reengineered to allow organisms to process
signals and manufacture useful chemicals. However, their functions currently rely on …
signals and manufacture useful chemicals. However, their functions currently rely on …
[PDF][PDF] Determination of the gene regulatory network of a genome-reduced bacterium highlights alternative regulation independent of transcription factors
E Yus, V Llorens-Rico, S Martinez, C Gallo, H Eilers… - Cell Systems, 2019 - cell.com
Here, we determined the relative importance of different transcriptional mechanisms in the
genome-reduced bacterium Mycoplasma pneumoniae, by employing an array of …
genome-reduced bacterium Mycoplasma pneumoniae, by employing an array of …
Persistence and plasticity in bacterial gene regulation
LA Baumgart, JE Lee, A Salamov, DJ Dilworth, H Na… - Nature …, 2021 - nature.com
Organisms orchestrate cellular functions through transcription factor (TF) interactions with
their target genes, although these regulatory relationships are largely unknown in most …
their target genes, although these regulatory relationships are largely unknown in most …