Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria

E Martínez-García, V de Lorenzo - Synthetic gene networks: methods and …, 2012 - Springer
A good part of the contemporary synthetic biology agenda aims at reprogramming
microorganisms to enhance existing functions and/or perform new tasks. Moreover, the …

Bacterial growth: global effects on gene expression, growth feedback and proteome partition

S Klumpp, T Hwa - Current opinion in biotechnology, 2014 - Elsevier
Highlights•Genes and genetic circuits exhibit growth-rate dependence.•Growth rate
dependence reflects coupling of gene expression and physiological state of the cell.•Several …

From gene to protein—How bacterial virulence factors manipulate host gene expression during infection

L Denzer, H Schroten, C Schwerk - International Journal of Molecular …, 2020 - mdpi.com
Bacteria evolved many strategies to survive and persist within host cells. Secretion of
bacterial effectors enables bacteria not only to enter the host cell but also to manipulate host …

Multiplex transcriptional characterizations across diverse bacterial species using cell‐free systems

SS Yim, NI Johns, J Park, ALC Gomes… - Molecular Systems …, 2019 - embopress.org
Cell‐free expression systems enable rapid prototyping of genetic programs in vitro.
However, current throughput of cell‐free measurements is limited by the use of channel …

Insights into microbial cryptic gene activation and strain improvement: principle, application and technical aspects

K Ochi - The Journal of antibiotics, 2017 - nature.com
As bacteria and fungi have been found to contain genes encoding enzymes that synthesize
a plethora of potential secondary metabolites, interest has grown in the activation of these …

The XylS/Pm regulator/promoter system and its use in fundamental studies of bacterial gene expression, recombinant protein production and metabolic engineering

A Gawin, S Valla, T Brautaset - Microbial biotechnology, 2017 - Wiley Online Library
Summary The XylS/Pm regulator/promoter system originating from the Pseudomonas putida
TOL plasmid pWW 0 is widely used for regulated low‐and high‐level recombinant …

Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes

A Barnard, A Wolfe, S Busby - Current opinion in microbiology, 2004 - Elsevier
Most bacterial promoters are regulated by several signals. This is reflected in the complexity
of their organization, with multiple binding sites for different transcription factors. Studies of a …

Shaping bacterial gene expression by physiological and proteome allocation constraints

M Scott, T Hwa - Nature Reviews Microbiology, 2023 - nature.com
Networks of molecular regulators are often the primary objects of focus in the study of gene
regulation, with the machinery of protein synthesis tacitly relegated to the background …

Dynamic pathway regulation: recent advances and methods of construction

SZ Tan, KLJ Prather - Current Opinion in Chemical Biology, 2017 - Elsevier
Highlights•Microbial production of valuable chemicals can be improved by dynamic
regulation.•Dynamic regulation balances flux between growth of cell and production of …

MiST: a microbial signal transduction database

LE Ulrich, IB Zhulin - Nucleic acids research, 2007 - academic.oup.com
Signal transduction pathways control most cellular activities in living cells ranging from
regulation of gene expression to fine-tuning enzymatic activity and controlling motile …