Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria
E Martínez-García, V de Lorenzo - Synthetic gene networks: methods and …, 2012 - Springer
A good part of the contemporary synthetic biology agenda aims at reprogramming
microorganisms to enhance existing functions and/or perform new tasks. Moreover, the …
microorganisms to enhance existing functions and/or perform new tasks. Moreover, the …
Bacterial growth: global effects on gene expression, growth feedback and proteome partition
Highlights•Genes and genetic circuits exhibit growth-rate dependence.•Growth rate
dependence reflects coupling of gene expression and physiological state of the cell.•Several …
dependence reflects coupling of gene expression and physiological state of the cell.•Several …
From gene to protein—How bacterial virulence factors manipulate host gene expression during infection
L Denzer, H Schroten, C Schwerk - International Journal of Molecular …, 2020 - mdpi.com
Bacteria evolved many strategies to survive and persist within host cells. Secretion of
bacterial effectors enables bacteria not only to enter the host cell but also to manipulate host …
bacterial effectors enables bacteria not only to enter the host cell but also to manipulate host …
Multiplex transcriptional characterizations across diverse bacterial species using cell‐free systems
Cell‐free expression systems enable rapid prototyping of genetic programs in vitro.
However, current throughput of cell‐free measurements is limited by the use of channel …
However, current throughput of cell‐free measurements is limited by the use of channel …
Insights into microbial cryptic gene activation and strain improvement: principle, application and technical aspects
K Ochi - The Journal of antibiotics, 2017 - nature.com
As bacteria and fungi have been found to contain genes encoding enzymes that synthesize
a plethora of potential secondary metabolites, interest has grown in the activation of these …
a plethora of potential secondary metabolites, interest has grown in the activation of these …
The XylS/Pm regulator/promoter system and its use in fundamental studies of bacterial gene expression, recombinant protein production and metabolic engineering
A Gawin, S Valla, T Brautaset - Microbial biotechnology, 2017 - Wiley Online Library
Summary The XylS/Pm regulator/promoter system originating from the Pseudomonas putida
TOL plasmid pWW 0 is widely used for regulated low‐and high‐level recombinant …
TOL plasmid pWW 0 is widely used for regulated low‐and high‐level recombinant …
Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes
Most bacterial promoters are regulated by several signals. This is reflected in the complexity
of their organization, with multiple binding sites for different transcription factors. Studies of a …
of their organization, with multiple binding sites for different transcription factors. Studies of a …
Shaping bacterial gene expression by physiological and proteome allocation constraints
M Scott, T Hwa - Nature Reviews Microbiology, 2023 - nature.com
Networks of molecular regulators are often the primary objects of focus in the study of gene
regulation, with the machinery of protein synthesis tacitly relegated to the background …
regulation, with the machinery of protein synthesis tacitly relegated to the background …
Dynamic pathway regulation: recent advances and methods of construction
SZ Tan, KLJ Prather - Current Opinion in Chemical Biology, 2017 - Elsevier
Highlights•Microbial production of valuable chemicals can be improved by dynamic
regulation.•Dynamic regulation balances flux between growth of cell and production of …
regulation.•Dynamic regulation balances flux between growth of cell and production of …
MiST: a microbial signal transduction database
LE Ulrich, IB Zhulin - Nucleic acids research, 2007 - academic.oup.com
Signal transduction pathways control most cellular activities in living cells ranging from
regulation of gene expression to fine-tuning enzymatic activity and controlling motile …
regulation of gene expression to fine-tuning enzymatic activity and controlling motile …