Growth defects and loss-of-function in synthetic gene circuits

EM Nikolados, AY Weiße, F Ceroni… - ACS synthetic …, 2019 - ACS Publications
Synthetic gene circuits perturb the physiology of their cellular host. The extra load on
endogenous processes shifts the equilibrium of resource allocation in the host, leading to …

Paradigms of pathogenesis: targeting the mobile genetic elements of disease

EC Keen - Frontiers in cellular and infection microbiology, 2012 - frontiersin.org
A century ago, Gertrude Stein told us that a rose is a rose is a rose, but today, modern
genomics is telling us that a pathogen is not a pathogen. Advances in pathogenomics have …

Prokaryotic genome regulation: multifactor promoters, multitarget regulators and hierarchic networks

A Ishihama - FEMS microbiology reviews, 2010 - academic.oup.com
The vast majority of experimental data have been accumulated on the transcription
regulation of individual genes within a single model prokaryote, Escherichia coli, which form …

SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities

E Martínez-García, T Aparicio… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Standard European Vector Architecture 2.0 database (SEVA-DB 2.0,
http://seva. cnb. csic. es) is an improved and expanded version of the platform released in …

Prokaryotic gene clusters: a rich toolbox for synthetic biology

M Fischbach, CA Voigt - Biotechnology journal, 2010 - Wiley Online Library
Bacteria construct elaborate nanostructures, obtain nutrients and energy from diverse
sources, synthesize complex molecules, and implement signal processing to react to their …

Transcriptional regulators a la carte: engineering new effector specificities in bacterial regulatory proteins

TC Galvão, V De Lorenzo - Current Opinion in Biotechnology, 2006 - Elsevier
For many regulators of bacterial biodegradation pathways, small molecule/effector binding is
the signal for triggering transcriptional activation. Thus, regulation results from a cross-talk …

[HTML][HTML] The black cat/white cat principle of signal integration in bacterial promoters

I Cases, V de Lorenzo - The EMBO Journal, 2001 - embopress.org
Throughout the 3000 million years that bacteria have been on planet Earth, they have
evolved amazing mechanisms for rapid adaptation to every imaginable type of …

Directed evolution and synthetic biology applications to microbial systems

MC Bassalo, R Liu, RT Gill - Current opinion in biotechnology, 2016 - Elsevier
Highlights•Directed evolution allows complex trait engineering at a systems-scale.•Synthetic
biology accelerates directed evolution with diversity generation tools.•Synthetic biology can …

Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

DA Rodionov - Chemical reviews, 2007 - ACS Publications
Microorganisms in most ecological niches are constantly exposed to variations of many
environmental factors, including temperature; oxygen, nutrient, and water availability; …

Activating transcription in bacteria

DJ Lee, SD Minchin, SJW Busby - Annual review of microbiology, 2012 - annualreviews.org
Bacteria use a variety of mechanisms to direct RNA polymerase to specific promoters in
order to activate transcription in response to growth signals or environmental cues …