Activating transcription in bacteria

DJ Lee, SD Minchin, SJW Busby - Annual review of microbiology, 2012 - annualreviews.org
Bacteria use a variety of mechanisms to direct RNA polymerase to specific promoters in
order to activate transcription in response to growth signals or environmental cues …

Bacterial regulatory networks are extremely flexible in evolution

I Lozada-Chavez, SC Janga… - Nucleic acids …, 2006 - academic.oup.com
Over millions of years the structure and complexity of the transcriptional regulatory network
(TRN) in bacteria has changed, reorganized and enabled them to adapt to almost every …

Unknown unknowns: essential genes in quest for function

A Danchin, G Fang - Microbial Biotechnology, 2016 - Wiley Online Library
The experimental design of a minimal synthetic genome revealed the presence of a large
number of genes without ascribed function, in part because the abstract laws of life must be …

Synthetic biology-inspired strategies and tools for engineering of microbial natural product biosynthetic pathways

K Alam, J Hao, Y Zhang, A Li - Biotechnology Advances, 2021 - Elsevier
Microbial-derived natural products (NPs) and their derivative products are of great
importance and used widely in many fields, especially in pharmaceutical industries …

Motifs, modules and games in bacteria

DM Wolf, AP Arkin - Current opinion in microbiology, 2003 - Elsevier
Global explorations of regulatory network dynamics, organization and evolution have
become tractable thanks to high-throughput sequencing and molecular measurement of …

A predictive biophysical model of translational coupling to coordinate and control protein expression in bacterial operons

T Tian, HM Salis - Nucleic acids research, 2015 - academic.oup.com
Natural and engineered genetic systems require the coordinated expression of proteins. In
bacteria, translational coupling provides a genetically encoded mechanism to control …

Hierarchy and feedback in the evolution of the Escherichia coli transcription network

M Cosentino Lagomarsino, P Jona… - Proceedings of the …, 2007 - National Acad Sciences
The Escherichia coli transcription network has an essentially feedforward structure, with
abundant feedback at the level of self-regulations. Here, we investigate how these …

Metabolic engineering in the-omics era: elucidating and modulating regulatory networks

GN Vemuri, AA Aristidou - Microbiology and Molecular Biology …, 2005 - Am Soc Microbiol
The importance of regulatory control in metabolic processes is widely acknowledged, and
several enquiries (both local and global) are being made in understanding regulation at …

Regulation of bacterial gene expression by transcription attenuation

CL Turnbough Jr - Microbiology and Molecular Biology Reviews, 2019 - Am Soc Microbiol
SUMMARY A wide variety of mechanisms that control gene expression in bacteria are
based on conditional transcription termination. Generally, in these mechanisms, a …

[HTML][HTML] Functional organisation of Escherichia coli transcriptional regulatory network

A Martínez-Antonio, SC Janga, D Thieffry - Journal of molecular biology, 2008 - Elsevier
Taking advantage of available functional data associated with 115 transcription and 7 sigma
factors, we have performed a structural analysis of the regulatory network of Escherichia coli …