κ-helix and the helical lock and key model: a pivotal way of looking at polyproline II
Abstract Motivation Polyproline II (PPII) is a common conformation, comparable to α-helix
and β-sheet. PPII, recently termed with a more generic name—κ-helix, adopts a left-handed …
and β-sheet. PPII, recently termed with a more generic name—κ-helix, adopts a left-handed …
A helical lock and key model of polyproline II conformation with SH3
Motivation More than half of the human proteome contains the proline-rich motif, PxxP. This
motif has a high propensity for adopting a left-handed polyproline II (PPII) helix and can …
motif has a high propensity for adopting a left-handed polyproline II (PPII) helix and can …
Host‐guest scale of left‐handed polyproline II helix formation
AL Rucker, CT Pager, MN Campbell… - Proteins: Structure …, 2003 - Wiley Online Library
Despite the clear importance of the left‐handed polyproline II (PPII) helical conformation in
many physiologically important processes as well as its potential significance in protein …
many physiologically important processes as well as its potential significance in protein …
From data or dogma? The myth of the ideal helix
DJ Kuster, S Urahata, JW Ponder, GR Marshall - Biophysical Journal, 2009 - cell.com
Texas A&M Univ, College Station, TX, USA. The 136 kDa Bacillus stearothermophilus
phosphofructokinase (BsPFK) is a homotetramer that is allosterically inhibited by phospho …
phosphofructokinase (BsPFK) is a homotetramer that is allosterically inhibited by phospho …
Architectonic Principles of Polyproline II Helix Bundle Protein Domains
C Segura Rodríguez, DV Laurents - bioRxiv, 2023 - biorxiv.org
Glycine rich polyproline II helix assemblies are an emerging class of natural domains found
in several proteins with different functions and diverse origins. The distinct properties of …
in several proteins with different functions and diverse origins. The distinct properties of …
Insight into a molecular interaction force supporting peptide backbones and its implication to protein loops and folding
QS Du, D Chen, NZ Xie, RB Huang… - Journal of Biomolecular …, 2015 - Taylor & Francis
Although not being classified as the most fundamental protein structural elements like α-
helices and β-strands, the loop segment may play considerable roles for protein stability …
helices and β-strands, the loop segment may play considerable roles for protein stability …
Understanding a protein fold: The physics, chemistry, and biology of α-helical coiled coils
DN Woolfson - Journal of Biological Chemistry, 2023 - ASBMB
Protein science is being transformed by powerful computational methods for structure
prediction and design: AlphaFold2 can predict many natural protein structures from …
prediction and design: AlphaFold2 can predict many natural protein structures from …
Conformational flexibility of PPII-helix: A density functional theory study
P Guo, X Lei, Y Gao - Chemical Physics Letters, 2016 - Elsevier
Poly-proline fragments form the distinctive PPII-helix in a high percentage in proteins and
peptides, which plays an important role in signal transduction and protein complex …
peptides, which plays an important role in signal transduction and protein complex …
PiPred–a deep-learning method for prediction of π-helices in protein sequences
J Ludwiczak, A Winski, AM da Silva Neto… - Scientific reports, 2019 - nature.com
Canonical π-helices are short, relatively unstable secondary structure elements found in
proteins. They comprise seven or more residues and are present in 15% of all known protein …
proteins. They comprise seven or more residues and are present in 15% of all known protein …
A geometric parameterization for beta turns
NE Newell - bioRxiv, 2024 - biorxiv.org
Beta turns, in which the protein backbone abruptly changes direction over four amino acid
residues, are the most common type of protein secondary structure after helices and strands …
residues, are the most common type of protein secondary structure after helices and strands …