[HTML][HTML] ATP Binding to the σ54-Dependent Activator XylRTriggers a Protein Multimerization Cycle Catalyzed by UAS DNA

J Pérez-Martín, V de Lorenzo - Cell, 1996 - cell.com
The events that take place at the prokaryotic enhancer of the Pu promoter of Pseudomonas
putida prior to the engagement of the σ 54-RNA polymerase (σ 54-RNAP) have been …

The IHF regulon of exponentially growing Pseudomonas putida cells

R Silva‐Rocha, M Chavarría, RJ Kleijn… - Environmental …, 2013 - Wiley Online Library
Integration host factor (IHF) sites are largely absent from intergenic regions of ORFs
encoding central metabolic functions in Pseudomonas putida mt‐2. To gain an insight into …

In Vivo and In Vitro Effects of (p)ppGpp on the ς54 Promoter Pu of the TOL Plasmid ofPseudomonas putida

M Carmona, MJ Rodríguez… - Journal of …, 2000 - Am Soc Microbiol
The connection between the physiological control of the ς54-dependent Pu promoter of the
TOL plasmid pWW0 of Pseudomonas putida and the stringent response mediated by the …

Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies

A Sharma, RN Leach, C Gell, N Zhang… - Nucleic Acids …, 2014 - academic.oup.com
Recognition of bacterial promoters is regulated by two distinct classes of sequence-specific
sigma factors, σ70 or σ54, that differ both in their primary sequence and in the requirement of …

[HTML][HTML] Structural properties of prokaryotic promoter regions correlate with functional features

P Meysman, J Collado-Vides, E Morett, R Viola… - PloS one, 2014 - journals.plos.org
The structural properties of the DNA molecule are known to play a critical role in
transcription. In this paper, the structural profiles of promoter regions were studied within the …

Activation and Repression of Transcription at the Double Tandem Divergent Promoters for the xylR and xylS Genes of the TOL Plasmid of Pseudomonas putida

S Marqués, MT Gallegos, M Manzanera… - Journal of …, 1998 - Am Soc Microbiol
The xylR and xylS genes are divergent and control transcription of the TOL plasmid
catabolic pathways for toluene metabolism. Four promoters are found in the 300-bp …

Physical organization of the upper pathway operon promoter of the Pseudomonas TOL plasmid. Sequence and positional requirements for XylR-dependent activation …

MA Abril, JL Ramos - Molecular and General Genetics MGG, 1993 - Springer
The upper pathway operon of the Pseudomonas putida TOL plasmid belongs to the− 12/-24
class of promoters. These promoters exhibit three regions critical for regulated transcription …

IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn4652 in stationary phase

H Ilves, R Hõrak, R Teras, M Kivisaar - Molecular microbiology, 2004 - Wiley Online Library
Transpositional activity of mobile elements is not constant. Conditional regulation of host
factors involved in transposition may severely change the activity of mobile elements. We …

Engineering Bacterial Transcription Regulation To Create a Synthetic in Vitro Two-Hybrid System for Protein Interaction Assays

Y Zhou, H Asahara, N Schneider… - Journal of the …, 2014 - ACS Publications
Transcriptional activation of σ54-RNA polymerase holoenzyme (σ54-RNAP) in bacteria is
dependent on a cis-acting DNA element (bacterial enhancer), which recruits the bacterial …

Direct atomic force microscopy visualization of integration host factor-induced DNA bending structure of the promoter regulatory region on the Pseudomonas TOL …

GH Seong, E Kobatake, K Miura, A Nakazawa… - Biochemical and …, 2002 - Elsevier
Atomic force microscopy (AFM) was used to analyze DNA bending induced by integration
host factor (IHF). The direct AFM visualization of IHF–DNA complexes on the OP1 promoter …