[HTML][HTML] A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
The identification of MHC class II restricted peptide epitopes is an important goal in
immunological research. A number of computational tools have been developed for this …
immunological research. A number of computational tools have been developed for this …
Improved methods for predicting peptide binding affinity to MHC class II molecules
Major histocompatibility complex class II (MHC‐II) molecules are expressed on the surface
of professional antigen‐presenting cells where they display peptides to T helper cells, which …
of professional antigen‐presenting cells where they display peptides to T helper cells, which …
[HTML][HTML] A community resource benchmarking predictions of peptide binding to MHC-I molecules
Recognition of peptides bound to major histocompatibility complex (MHC) class I molecules
by T lymphocytes is an essential part of immune surveillance. Each MHC allele has a …
by T lymphocytes is an essential part of immune surveillance. Each MHC allele has a …
Automated benchmarking of peptide-MHC class I binding predictions
Motivation: Numerous in silico methods predicting peptide binding to major
histocompatibility complex (MHC) class I molecules have been developed over the last …
histocompatibility complex (MHC) class I molecules have been developed over the last …
[HTML][HTML] Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior
Background Experts in peptide: MHC binding studies are often able to estimate the impact of
a single residue substitution based on a heuristic understanding of amino acid similarity in …
a single residue substitution based on a heuristic understanding of amino acid similarity in …
An automated benchmarking platform for MHC class II binding prediction methods
M Andreatta, T Trolle, Z Yan, JA Greenbaum… - …, 2018 - academic.oup.com
Motivation Computational methods for the prediction of peptide-MHC binding have become
an integral and essential component for candidate selection in experimental T cell epitope …
an integral and essential component for candidate selection in experimental T cell epitope …
[HTML][HTML] Prediction of MHC class I binding peptides, using SVMHC
P Dönnes, A Elofsson - BMC bioinformatics, 2002 - Springer
Background T-cells are key players in regulating a specific immune response. Activation of
cytotoxic T-cells requires recognition of specific peptides bound to Major Histocompatibility …
cytotoxic T-cells requires recognition of specific peptides bound to Major Histocompatibility …
NetMHCpan-4.0: improved peptide–MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data
Cytotoxic T cells are of central importance in the immune system's response to disease.
They recognize defective cells by binding to peptides presented on the cell surface by MHC …
They recognize defective cells by binding to peptides presented on the cell surface by MHC …
[HTML][HTML] Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions
Background It is important to accurately determine the performance of peptide: MHC binding
predictions, as this enables users to compare and choose between different prediction …
predictions, as this enables users to compare and choose between different prediction …
[HTML][HTML] Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes
W Zhao, X Sher - PLoS computational biology, 2018 - journals.plos.org
A number of machine learning-based predictors have been developed for identifying
immunogenic T-cell epitopes based on major histocompatibility complex (MHC) class I and II …
immunogenic T-cell epitopes based on major histocompatibility complex (MHC) class I and II …
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