[HTML][HTML] Constructing integrated networks for identifying new secondary metabolic pathway regulators in grapevine: recent applications and future opportunities

DCJ Wong, JT Matus - Frontiers in plant science, 2017 - frontiersin.org
Representing large biological data as networks is becoming increasingly adopted for
predicting gene function while elucidating the multifaceted organization of life processes. In …

[HTML][HTML] Drawing Links from Transcriptome to Metabolites: The Evolution of Aroma in the Ripening Berry of Moscato Bianco (Vitis vinifera L.)

L Costantini, CD Kappel, M Trenti, J Battilana… - Frontiers in plant …, 2017 - frontiersin.org
Monoterpenes confer typical floral notes to “Muscat” grapevine varieties and, to a lesser
extent, to other aromatic non-Muscat varieties. Previous studies have led to the identification …

[HTML][HTML] Omics approaches for understanding grapevine berry development: regulatory networks associated with endogenous processes and environmental …

A Serrano, C Espinoza, G Armijo… - Frontiers in plant …, 2017 - frontiersin.org
Grapevine fruit development is a dynamic process that can be divided into three stages:
formation (I), lag (II), and ripening (III), in which physiological and biochemical changes …

[HTML][HTML] VitisNet:“Omics” integration through grapevine molecular networks

J Grimplet, GR Cramer, JA Dickerson, K Mathiason… - PloS one, 2009 - journals.plos.org
Background Genomic data release for the grapevine has increased exponentially in the last
five years. The Vitis vinifera genome has been sequenced and Vitis EST, transcriptomic …

[HTML][HTML] VTCdb: a gene co-expression database for the crop species Vitis vinifera (grapevine)

DCJ Wong, C Sweetman, DP Drew, CM Ford - BMC genomics, 2013 - Springer
Background Gene expression datasets in model plants such as Arabidopsis have
contributed to our understanding of gene function and how a single underlying biological …

[HTML][HTML] System-level and granger network analysis of integrated proteomic and metabolomic dynamics identifies key points of grape berry development at the …

L Wang, X Sun, J Weiszmann… - Frontiers in plant …, 2017 - frontiersin.org
Grapevine is a fruit crop with worldwide economic importance. The grape berry undergoes
complex biochemical changes from fruit set until ripening. This ripening process and …

Identification of putative stage-specific grapevine berry biomarkers and omics data integration into networks

A Zamboni, M Di Carli, F Guzzo, M Stocchero… - Plant …, 2010 - academic.oup.com
The analysis of grapevine (Vitis vinifera) berries at the transcriptomic, proteomic, and
metabolomic levels can provide great insight into the molecular events underlying berry …

Aggregated gene co-expression networks predict transcription factor regulatory landscapes in grapevine

L Orduña, A Santiago, D Navarro-Payá… - Journal of …, 2023 - academic.oup.com
Gene co-expression networks (GCNs) have not been extensively studied in non-model
plants. However, the rapid accumulation of transcriptome datasets in certain species …

[HTML][HTML] GC–MS metabolic profiling of Cabernet Sauvignon and Merlot cultivars during grapevine berry development and network analysis reveals a stage-and …

A Cuadros-Inostroza, S Ruíz-Lara, E González… - Metabolomics, 2016 - Springer
Abstract Information about the total chemical composition of primary metabolites during
grape berry development is scarce, as are comparative studies trying to understand to what …

[HTML][HTML] Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development

LG Deluc, J Grimplet, MD Wheatley, RL Tillett… - BMC genomics, 2007 - Springer
Background Grape berry development is a dynamic process that involves a complex series
of molecular genetic and biochemical changes divided into three major phases. During …