Gene regulation by sense–antisense overlap of polyadenylation signals

R Gu, Z Zhang, JN DeCerbo, GG Carmichael - Rna, 2009 - rnajournal.cshlp.org
We show here that expression of genes from convergent transcription units can be regulated
by the formation of double-stranded RNA (dsRNA) in the region of overlapping …

How a small DNA virus uses dsRNA but not RNAi to regulate its life cycle

R Gu, Z Zhang, GG Carmichael - Cold Spring Harbor …, 2006 - symposium.cshlp.org
Mouse polyomavirus contains a circular DNA genome, with early and late genes transcribed
from opposite strands. At early times after infection, genes encoded from the early …

Mechanisms and consequences of alternative polyadenylation

DC Di Giammartino, K Nishida, JL Manley - Molecular cell, 2011 - cell.com
Alternative polyadenylation (APA) is emerging as a widespread mechanism used to control
gene expression. Like alternative splicing, usage of alternative poly (A) sites allows a single …

Alternative polyadenylation of mammalian transcripts is generally deleterious, not adaptive

C Xu, J Zhang - Cell systems, 2018 - cell.com
Alternative polyadenylation (APA) produces from the same gene multiple mature RNAs with
varying 3′ ends. Although APA is commonly believed to generate beneficial functional …

Alternative polyadenylation diversifies post‐transcriptional regulation by selective RNA–protein interactions

I Gupta, S Clauder‐Münster, B Klaus… - Molecular systems …, 2014 - embopress.org
Recent research has uncovered extensive variability in the boundaries of transcript isoforms,
yet the functional consequences of this variation remain largely unexplored. Here, we …

Alternative polyadenylation regulation: insights from sequential polyadenylation

P Tang, Y Zhou - Transcription, 2022 - Taylor & Francis
The processing of the proximal and distal poly (A) sites in alternative polyadenylation (APA)
has long been thought to independently occur on pre-mRNAs during transcription. However …

Transcriptional activity regulates alternative cleavage and polyadenylation

Z Ji, W Luo, W Li, M Hoque, Z Pan, Y Zhao… - Molecular systems …, 2011 - embopress.org
Genes containing multiple pre‐mRNA cleavage and polyadenylation sites, or polyA sites,
express mRNA isoforms with variable 3′ untranslated regions (UTRs). By systematic …

[HTML][HTML] Ending the message: poly (A) signals then and now

NJ Proudfoot - Genes & development, 2011 - genesdev.cshlp.org
Abstract Polyadenylation [poly (A)] signals (PAS) are a defining feature of eukaryotic protein-
coding genes. The central sequence motif AAUAAA was identified in the mid-1970s and …

Tissue‐specific mechanisms of alternative polyadenylation: testis, brain, and beyond

CC MacDonald, KW McMahon - Wiley Interdisciplinary Reviews …, 2010 - Wiley Online Library
Changing the position of the poly (A) tail in an mRNA—alternative polyadenylation—is an
important mechanism to increase the diversity of gene expression, especially in metazoans …

Splice site choice in a complex transcription unit containing multiple inefficient polyadenylation signals

Y Luo, GG Carmichael - Molecular and cellular biology, 1991 - Taylor & Francis
The relationship between polyadenylation and splicing was investigated in a model system
consisting of two tandem but nonidentical polyomavirus late transcription units. This model …