Identifying enriched drug fragments as possible candidates for metabolic engineering

S Sharma, K Karri, I Thapa, D Bastola, D Ghersi - BMC medical genomics, 2016 - Springer
Background Fragment-based approaches have now become an important component of the
drug discovery process. At the same time, pharmaceutical chemists are more often turning to …

Fragment library of natural products and compound databases for drug discovery

AL Chávez-Hernández, N Sánchez-Cruz… - Biomolecules, 2020 - mdpi.com
Natural products and semi-synthetic compounds continue to be a significant source of drug
candidates for a broad range of diseases, including coronavirus disease 2019 (COVID-19) …

A novel prediction model for discovering beneficial effects of natural compounds in drug repurposing

S Chandrababu, D Bastola - … , IWBBIO 2020, Granada, Spain, May 6–8 …, 2020 - Springer
Natural compounds are promising leads in drug discovery due to their low toxicity and
synergistic effects existing in nature, providing efficient and low-cost therapeutic solutions …

Strategies for dealing with metabolite elucidation in drug discovery and development

AEF Nassar, RE Talaat - Drug discovery today, 2004 - Elsevier
Structural information on metabolites can be a considerable asset for enhancing and
streamlining the process of developing new drug candidates. Modern approaches that …

FRAGMENTISE: A user‐friendly, cross‐platform tool to create and analyze comprehensive small‐molecule fragment databases

JM Zarnecka, KH Kaminska - Journal of Computational …, 2023 - Wiley Online Library
The ongoing COVID‐19 pandemic, and constant demand for new therapies in unmet clinical
needs, necessitates strategies to identify drug candidates for rapid clinical deployment. Over …

Identification of repurpose drugs by computational analysis of disease–gene–drug associations

J Gopal, VS Prakash Sinnarasan… - Journal of …, 2021 - liebertpub.com
Repurposing of marketed drugs to find new indications has become an alternative to
circumvent the risk of traditional drug development by its productivity quality. Despite many …

A mapping of drug space from the viewpoint of small molecule metabolism

JC Adams, MJ Keiser, L Basuino… - PLoS Computational …, 2009 - journals.plos.org
Small molecule drugs target many core metabolic enzymes in humans and pathogens, often
mimicking endogenous ligands. The effects may be therapeutic or toxic, but are frequently …

FragmentStore—a comprehensive database of fragments linking metabolites, toxic molecules and drugs

J Ahmed, CL Worth, P Thaben, C Matzig… - Nucleic acids …, 2010 - academic.oup.com
Consideration of biomolecules in terms of their molecular building blocks provides valuable
new information regarding their synthesis, degradation and similarity. Here, we present the …

PharmOmics: A species-and tissue-specific drug signature database and online tool for toxicity prediction and drug repurposing

YW Chen, D Arneson, G Diamente, J Garcia, N Zaghari… - bioRxiv, 2019 - biorxiv.org
Drug development has been hampered by a high failure rate in clinical trials due to
suboptimal efficacy or safety issues that are not predicted by preclinical studies in model …

Fragment library design: Using cheminformatics and expert chemists to fill gaps in existing fragment libraries

PS Kutchukian, SS So, C Fischer, CL Waller - Fragment-Based Methods in …, 2015 - Springer
Fragment based screening (FBS) has emerged as a mainstream lead discovery strategy in
academia, biotechnology start-ups, and large pharma. As a prerequisite of FBS, a …