Application of ecological and evolutionary theory to microbiome community dynamics across systems

JE McDonald, JR Marchesi… - Proceedings of the …, 2020 - royalsocietypublishing.org
A fundamental aim of microbiome research is to understand the factors that influence the
assembly and stability of host-associated microbiomes, and their impact on host phenotype …

The microbiome beyond the horizon of ecological and evolutionary theory

B Koskella, LJ Hall, CJE Metcalf - Nature ecology & evolution, 2017 - nature.com
The ecological and evolutionary study of community formation, diversity, and stability is
rooted in general theory and reinforced by decades of system-specific empirical work …

Ecological modelling approaches for predicting emergent properties in microbial communities

NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in shaping
microbial communities and the ecosystems of which they are a part. Emergent properties …

Searching for principles of microbial ecology across levels of biological organization

M Gralka - Integrative and Comparative Biology, 2023 - academic.oup.com
Microbial communities play pivotal roles in ecosystems across different scales, from global
elemental cycles to household food fermentations. These complex assemblies comprise …

[PDF][PDF] Introduction: The host-associated microbiome: Pattern, process and function

LW Parfrey, CS Moreau, JA Russell - Molecular ecology, 2018 - par.nsf.gov
An explosion of studies in recent years has established the ubiquity of host-associated
microbes and their centrality to host biology (McFall-Ngai etal., 2013; Russell, Dubilier, & …

The dynamic core microbiome: Structure, dynamics and stability

JR Björk, RB O'Hara, M Ribes, R Coma, JM Montoya - BioRxiv, 2017 - biorxiv.org
The long-term stability of microbiomes is crucial as the persistent occurrence of beneficial
microbes and their associated functions ensure host health and well-being. Microbiomes are …

Challenges for complex microbial ecosystems: combination of experimental approaches with mathematical modeling

S Haruta, T Yoshida, Y Aoi, K Kaneko… - Microbes and …, 2013 - jstage.jst.go.jp
In the past couple of decades, molecular ecological techniques have been developed to
elucidate microbial diversity and distribution in microbial ecosystems. Currently, modern …

The role of ecological theory in microbial ecology

JI Prosser, BJM Bohannan, TP Curtis, RJ Ellis… - Nature Reviews …, 2007 - nature.com
Microbial ecology is currently undergoing a revolution, with repercussions spreading
throughout microbiology, ecology and ecosystem science. The rapid accumulation of …

Can the microbiome influence host evolutionary trajectories?

LP Henry, M Bruijning, SKG Forsberg, JF Ayroles - Biorxiv, 2019 - biorxiv.org
The microbiome shapes many traits in hosts, but we still do not understand how it influences
host evolution. To impact host evolution, the microbiome must be heritable and have …

Fifty important research questions in microbial ecology

RE Antwis, SM Griffiths, XA Harrison… - FEMS Microbiology …, 2017 - academic.oup.com
Microbial ecology provides insights into the ecological and evolutionary dynamics of
microbial communities underpinning every ecosystem on Earth. Microbial communities can …