GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure
The 3D structure of a protein can be predicted from its amino acid sequence with high
accuracy for a large fraction of cases because of the availability of large quantities of …
accuracy for a large fraction of cases because of the availability of large quantities of …
High‐accuracy protein structures by combining machine‐learning with physics‐based refinement
Protein structure prediction has long been available as an alternative to experimental
structure determination, especially via homology modeling based on templates from related …
structure determination, especially via homology modeling based on templates from related …
GalaxyRefine: Protein structure refinement driven by side-chain repacking
The quality of model structures generated by contemporary protein structure prediction
methods strongly depends on the degree of similarity between the target and available …
methods strongly depends on the degree of similarity between the target and available …
GalaxyWEB server for protein structure prediction and refinement
Three-dimensional protein structures provide invaluable information for understanding and
regulating biological functions of proteins. The GalaxyWEB server predicts protein structure …
regulating biological functions of proteins. The GalaxyWEB server predicts protein structure …
Critical assessment of methods of protein structure prediction (CASP)—Round XIII
CASP (critical assessment of structure prediction) assesses the state of the art in modeling
protein structure from amino acid sequence. The most recent experiment (CASP13 held in …
protein structure from amino acid sequence. The most recent experiment (CASP13 held in …
Critical assessment of methods of protein structure prediction (CASP)—Round XIV
Critical assessment of structure prediction (CASP) is a community experiment to advance
methods of computing three‐dimensional protein structure from amino acid sequence. Core …
methods of computing three‐dimensional protein structure from amino acid sequence. Core …
Improved protein structure prediction using predicted interresidue orientations
The prediction of interresidue contacts and distances from coevolutionary data using deep
learning has considerably advanced protein structure prediction. Here, we build on these …
learning has considerably advanced protein structure prediction. Here, we build on these …
2 : protein structure prediction server
Protein structure prediction provides valuable insights into function, and comparative
modeling is one of the most reliable methods to predict 3D structures directly from amino …
modeling is one of the most reliable methods to predict 3D structures directly from amino …
Critical assessment of methods of protein structure prediction: Progress and new directions in round XI
Modeling of protein structure from amino acid sequence now plays a major role in structural
biology. Here we report new developments and progress from the CASP11 community …
biology. Here we report new developments and progress from the CASP11 community …
[HTML][HTML] The trRosetta server for fast and accurate protein structure prediction
The trRosetta (transform-restrained Rosetta) server is a web-based platform for fast and
accurate protein structure prediction, powered by deep learning and Rosetta. With the input …
accurate protein structure prediction, powered by deep learning and Rosetta. With the input …