[HTML][HTML] Can systems biology advance clinical precision oncology?
A Rocca, BN Kholodenko - Cancers, 2021 - mdpi.com
Simple Summary Omics technologies and targeted drugs are revolutionizing the clinical
oncology landscape, portending the promise of precision oncology. However, our abilities to …
oncology landscape, portending the promise of precision oncology. However, our abilities to …
[HTML][HTML] Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth
Hybrid multiscale agent-based models (ABMs) are unique in their ability to simulate
individual cell interactions and microenvironmental dynamics. Unfortunately, the high …
individual cell interactions and microenvironmental dynamics. Unfortunately, the high …
[HTML][HTML] Multiscale modeling in systems biology: methods and perspectives
A Coulier - 2021 - diva-portal.org
In the last decades, mathematical and computational models have become ubiquitous to the
field of systems biology. Specifically, the multiscale nature of biological processes makes the …
field of systems biology. Specifically, the multiscale nature of biological processes makes the …
Advancing cancer drug development with mechanistic mathematical modeling: bridging the gap between theory and practice
Quantitative predictive modeling of cancer growth, progression, and individual response to
therapy is a rapidly growing field. Researchers from mathematical modeling, systems …
therapy is a rapidly growing field. Researchers from mathematical modeling, systems …
Article commentary: Predictive modeling of drug treatment in the area of personalized medicine
LA Ogilvie, C Wierling, T Kessler… - Cancer …, 2015 - journals.sagepub.com
Despite a growing body of knowledge on the mechanisms underlying the onset and
progression of cancer, treatment success rates in oncology are at best modest. Current …
progression of cancer, treatment success rates in oncology are at best modest. Current …
[HTML][HTML] Interpretable machine learning methods for predictions in systems biology from omics data
Machine learning has become a powerful tool for systems biologists, from diagnosing
cancer to optimizing kinetic models and predicting the state, growth dynamics, or type of a …
cancer to optimizing kinetic models and predicting the state, growth dynamics, or type of a …
Toward personalized computer simulation of breast cancer treatment: A multiscale pharmacokinetic and pharmacodynamic model informed by multitype patient data
The usefulness of mechanistic models to disentangle complex multiscale cancer processes,
such as treatment response, has been widely acknowledged. However, a major barrier for …
such as treatment response, has been widely acknowledged. However, a major barrier for …
Toward improved models of human cancer
BE Welm, C Vaklavas, AL Welm - APL bioengineering, 2021 - pubs.aip.org
Human cancer is a complex and heterogeneous collection of diseases that kills more than
18 million people every year worldwide. Despite advances in detection, diagnosis, and …
18 million people every year worldwide. Despite advances in detection, diagnosis, and …
[HTML][HTML] MEMMAL: A tool for expanding large-scale mechanistic models with machine learned associations and big datasets
C Erdem, MR Birtwistle - Frontiers in systems biology, 2023 - frontiersin.org
Computational models that can explain and predict complex sub-cellular, cellular, and tissue-
level drug response mechanisms could speed drug discovery and prioritize patient-specific …
level drug response mechanisms could speed drug discovery and prioritize patient-specific …
Multi-class and multi-scale models of complex biological phenomena
SY Jessica, N Bagheri - Current opinion in biotechnology, 2016 - Elsevier
Highlights•Choice of modeling framework should account for experimental context and
data.•Accurate models offer biological insight and explain non-intuitive observations.•Multi …
data.•Accurate models offer biological insight and explain non-intuitive observations.•Multi …