[HTML][HTML] Single-cell RNA-seq reveals lineage and X chromosome dynamics in human preimplantation embryos

S Petropoulos, D Edsgärd, B Reinius, Q Deng… - Cell, 2016 - cell.com
Mouse studies have been instrumental in forming our current understanding of early cell-
lineage decisions; however, similar insights into the early human development are severely …

[HTML][HTML] Single-cell RNA-seq reveals cellular heterogeneity of pluripotency transition and X chromosome dynamics during early mouse development

S Cheng, Y Pei, L He, G Peng, B Reinius, PPL Tam… - Cell reports, 2019 - cell.com
Following implantation, the epiblast (EPI) cells transit from the naive to primed pluripotency,
accompanied by dynamic changes in X chromosome activity in females. To investigate the …

Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation

G Chen, JP Schell, JA Benitez, S Petropoulos… - Genome …, 2016 - genome.cshlp.org
Pluripotency, differentiation, and X Chromosome inactivation (XCI) are key aspects of
embryonic development. However, the underlying relationship and mechanisms among …

[HTML][HTML] Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification

D Meistermann, A Bruneau, S Loubersac, A Reignier… - Cell Stem Cell, 2021 - cell.com
Understanding lineage specification during human pre-implantation development is a
gateway to improving assisted reproductive technologies and stem cell research. Here we …

[PDF][PDF] Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human pre-implantation epiblast

GG Stirparo, T Boroviak, G Guo, J Nichols… - …, 2018 - journals.biologists.com
Single-cell profiling techniques create opportunities to delineate cell fate progression in
mammalian development. Recent studies have provided transcriptome data from human pre …

[HTML][HTML] Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells

F Guo, L Li, J Li, X Wu, B Hu, P Zhu, L Wen, F Tang - Cell research, 2017 - nature.com
Single-cell epigenome sequencing techniques have recently been developed. However, the
combination of different layers of epigenome sequencing in an individual cell has not yet …

Defining the three cell lineages of the human blastocyst by single-cell RNA-seq

P Blakeley, NME Fogarty, I Del Valle… - …, 2015 - journals.biologists.com
Here, we provide fundamental insights into early human development by single-cell RNA-
sequencing of human and mouse preimplantation embryos. We elucidate conserved …

[HTML][HTML] Systematic reconstruction of cellular trajectories across mouse embryogenesis

C Qiu, J Cao, BK Martin, T Li, IC Welsh, S Srivatsan… - Nature …, 2022 - nature.com
Mammalian embryogenesis is characterized by rapid cellular proliferation and
diversification. Within a few weeks, a single-cell zygote gives rise to millions of cells …

[HTML][HTML] Single-cell multiomics sequencing reveals the functional regulatory landscape of early embryos

Y Wang, P Yuan, Z Yan, M Yang, Y Huo, Y Nie… - Nature …, 2021 - nature.com
Extensive epigenetic reprogramming occurs during preimplantation embryo development.
However, it remains largely unclear how the drastic epigenetic reprogramming contributes to …

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

L Yan, M Yang, H Guo, L Yang, J Wu, R Li… - Nature structural & …, 2013 - nature.com
Measuring gene expression in individual cells is crucial for understanding the gene
regulatory network controlling human embryonic development. Here we apply single-cell …