PRODeepSyn: predicting anticancer synergistic drug combinations by embedding cell lines with protein–protein interaction network

X Wang, H Zhu, Y Jiang, Y Li, C Tang… - Briefings in …, 2022 - academic.oup.com
Although drug combinations in cancer treatment appear to be a promising therapeutic
strategy with respect to monotherapy, it is arduous to discover new synergistic drug …

NEXGB: a network embedding framework for anticancer drug combination prediction

F Meng, F Li, JX Liu, J Shang, X Liu, Y Li - International Journal of …, 2022 - mdpi.com
Compared to single-drug therapy, drug combinations have shown great potential in cancer
treatment. Most of the current methods employ genomic data and chemical information to …

GraphSynergy: a network-inspired deep learning model for anticancer drug combination prediction

J Yang, Z Xu, WKK Wu, Q Chu… - Journal of the American …, 2021 - academic.oup.com
Objective To develop an end-to-end deep learning framework based on a protein–protein
interaction (PPI) network to make synergistic anticancer drug combination predictions …

[HTML][HTML] Deep graph embedding for prioritizing synergistic anticancer drug combinations

P Jiang, S Huang, Z Fu, Z Sun, TM Lakowski… - Computational and …, 2020 - Elsevier
Drug combinations are frequently used for the treatment of cancer patients in order to
increase efficacy, decrease adverse side effects, or overcome drug resistance. Given the …

DTSyn: a dual-transformer-based neural network to predict synergistic drug combinations

J Hu, J Gao, X Fang, Z Liu, F Wang… - Briefings in …, 2022 - academic.oup.com
Drug combination therapies are superior to monotherapy for cancer treatment in many ways.
Identifying novel drug combinations by screening is challenging for the wet-lab experiments …

AttenSyn: an attention-based deep graph neural network for anticancer synergistic drug combination prediction

T Wang, R Wang, L Wei - Journal of Chemical Information and …, 2023 - ACS Publications
Identifying synergistic drug combinations is fundamentally important to treat a variety of
complex diseases while avoiding severe adverse drug–drug interactions. Although several …

MARSY: a multitask deep-learning framework for prediction of drug combination synergy scores

MR El Khili, SA Memon, A Emad - Bioinformatics, 2023 - academic.oup.com
Motivation Combination therapies have emerged as a treatment strategy for cancers to
reduce the probability of drug resistance and to improve outcomes. Large databases …

A complete graph-based approach with multi-task learning for predicting synergistic drug combinations

X Wang, H Zhu, D Chen, Y Yu, Q Liu, Q Liu - Bioinformatics, 2023 - academic.oup.com
Motivation Drug combination therapy shows significant advantages over monotherapy in
cancer treatment. Since the combinational space is difficult to be traversed experimentally …

Predicting cell line-specific synergistic drug combinations through a relational graph convolutional network with attention mechanism

P Zhang, S Tu, W Zhang, L Xu - Briefings in Bioinformatics, 2022 - academic.oup.com
Identifying synergistic drug combinations (SDCs) is a great challenge due to the
combinatorial complexity and the fact that SDC is cell line specific. The existing …

SynPathy: Predicting drug synergy through drug-associated pathways using deep learning

YC Tang, A Gottlieb - Molecular Cancer Research, 2022 - AACR
Drug combination therapy has become a promising therapeutic strategy for cancer
treatment. While high-throughput drug combination screening is effective for identifying …