The age of the angiosperms: a molecular timescale without a clock

CD Bell, DE Soltis, PS Soltis - Evolution, 2005 - Wiley Online Library
The age of the angiosperms has long been of interest to botanists and evolutionary
biologists. Many early efforts to date the age of the angiosperms and evolutionary …

Using more than the oldest fossils: dating Osmundaceae with three Bayesian clock approaches

GW Grimm, P Kapli, B Bomfleur… - Systematic …, 2015 - academic.oup.com
A major concern in molecular clock dating is how to use information from the fossil record to
calibrate genetic distances from DNA sequences. Here we apply three Bayesian dating …

Bayesian dating of shallow phylogenies with a relaxed clock

RP Brown, Z Yang - Systematic biology, 2010 - academic.oup.com
Bayesian methods are increasingly being used to estimate divergence times without the
restrictive assumption of a global clock. Little is known about their reliability for shallow …

Bayesian tip-dated phylogenetics in paleontology: topological effects and stratigraphic fit

B King - Systematic Biology, 2021 - academic.oup.com
The incorporation of stratigraphic data into phylogenetic analysis has a long history of
debate but is not currently standard practice for paleontologists. Bayesian tip-dated (or …

[HTML][HTML] Gene transfers can date the tree of life

AA Davín, E Tannier, TA Williams, B Boussau… - Nature ecology & …, 2018 - nature.com
Biodiversity has always been predominantly microbial, and the scarcity of fossils from
bacteria, archaea and microbial eukaryotes has prevented a comprehensive dating of the …

A total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera

F Ronquist, S Klopfstein, L Vilhelmsen… - Systematic …, 2012 - academic.oup.com
Phylogenies are usually dated by calibrating interior nodes against the fossil record. This
relies on indirect methods that, in the worst case, misrepresent the fossil information. Here …

Bayesian molecular dating: opening up the black box

L Bromham, S Duchêne, X Hua, AM Ritchie… - Biological …, 2018 - Wiley Online Library
Molecular dating analyses allow evolutionary timescales to be estimated from genetic data,
offering an unprecedented capacity for investigating the evolutionary past of all species …

[HTML][HTML] Dating the diversification of the major lineages of Ascomycota (Fungi)

M Prieto, M Wedin - PloS one, 2013 - journals.plos.org
Establishing the dates for the origin and main diversification events in the phylogeny of
Ascomycota is among the most crucial remaining goals in understanding the evolution of …

Estimating timetrees with MEGA and the TimeTree resource

B Mello - Molecular biology and evolution, 2018 - academic.oup.com
The main outcome of molecular dating, the timetree, provides crucial information for
understanding the evolutionary history of lineages and is a requirement of several …

Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times

M Reis, Z Yang - Molecular biology and evolution, 2011 - academic.oup.com
The molecular clock provides a powerful way to estimate species divergence times. If
information on some species divergence times is available from the fossil or geological …