Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae
The identification and application of reliable fossil calibrations represents a key component
of many molecular studies of evolutionary timescales. In studies of plants, most …
of many molecular studies of evolutionary timescales. In studies of plants, most …
Detecting the node-density artifact in phylogeny reconstruction
C Venditti, A Meade, M Pagel - Systematic biology, 2006 - academic.oup.com
The node-density effect is an artifact of phylogeny reconstruction that can cause branch
lengths to be underestimated in areas of the tree with fewer taxa. Webster, Payne, and Pagel …
lengths to be underestimated in areas of the tree with fewer taxa. Webster, Payne, and Pagel …
Fungi evolution revisited: application of the penalized likelihood method to a Bayesian fungal phylogeny provides a new perspective on phylogenetic relationships …
ACB Padovan, GFO Sanson, A Brunstein… - Journal of Molecular …, 2005 - Springer
The depiction of evolutionary relationships within phylum Ascomycota is still controversial
because of unresolved branching orders in the radiation of major taxa. Here we generated a …
because of unresolved branching orders in the radiation of major taxa. Here we generated a …
An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants
SA Smith, JM Beaulieu… - Proceedings of the …, 2010 - National Acad Sciences
We present molecular dating analyses for land plants that incorporate 33 fossil calibrations,
permit rates of molecular evolution to be uncorrelated across the tree, and take into account …
permit rates of molecular evolution to be uncorrelated across the tree, and take into account …
Estimating divergence times from molecular data on phylogenetic and population genetic timescales
BS Arbogast, SV Edwards, J Wakeley… - Annual review of …, 2002 - annualreviews.org
▪ Abstract Molecular clocks have profoundly influenced modern views on the timing of
important events in evolutionary history. We review recent advances in estimating …
important events in evolutionary history. We review recent advances in estimating …
Six impossible things before breakfast: assumptions, models, and belief in molecular dating
L Bromham - Trends in Ecology & Evolution, 2019 - cell.com
Confidence in molecular dating analyses has grown with the increasing sophistication of the
methods. Some problematic cases where molecular dates disagreed with paleontological …
methods. Some problematic cases where molecular dates disagreed with paleontological …
Exploring uncertainty in the calibration of the molecular clock
Calibration is a critical step in every molecular clock analysis but it has been the least
considered. Bayesian approaches to divergence time estimation make it possible to …
considered. Bayesian approaches to divergence time estimation make it possible to …
Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches
Evolutionary and biogeographic studies increasingly rely on calibrated molecular clocks to
date key events. Although there has been significant recent progress in development of the …
date key events. Although there has been significant recent progress in development of the …
Molecular dating, evolutionary rates, and the age of the grasses
Many questions in evolutionary biology require an estimate of divergence times but, for
groups with a sparse fossil record, such estimates rely heavily on molecular dating methods …
groups with a sparse fossil record, such estimates rely heavily on molecular dating methods …
An examination of phylogenetic models of substitution rate variation among lineages
SYW Ho - Biology letters, 2009 - royalsocietypublishing.org
Molecular evolutionary rates can show significant variation among lineages, complicating
the task of estimating substitution rates and divergence times using phylogenetic methods …
the task of estimating substitution rates and divergence times using phylogenetic methods …