The body-wide transcriptome landscape of disease models
Virtually all diseases affect multiple organs. However, our knowledge of the body-wide
effects remains limited. Here, we report the body-wide transcriptome landscape across 13 …
effects remains limited. Here, we report the body-wide transcriptome landscape across 13 …
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
Here, we performed a comprehensive intra-tissue and inter-tissue multilayer network
analysis of the human transcriptome. We generated an atlas of communities in gene co …
analysis of the human transcriptome. We generated an atlas of communities in gene co …
A validated single-cell-based strategy to identify diagnostic and therapeutic targets in complex diseases
DR Gawel, J Serra-Musach, S Lilja, J Aagesen… - Genome medicine, 2019 - Springer
Background Genomic medicine has paved the way for identifying biomarkers and
therapeutically actionable targets for complex diseases, but is complicated by the …
therapeutically actionable targets for complex diseases, but is complicated by the …
The Gene Expression Landscape of Disease Genes
J García-González, S Garcia-Gonzalez, L Liou… - medRxiv, 2024 - medrxiv.org
Fine-mapping and gene-prioritisation techniques applied to the latest Genome-Wide
Association Study (GWAS) results have prioritised hundreds of genes as causally …
Association Study (GWAS) results have prioritised hundreds of genes as causally …
Integrating post-genomic approaches as a strategy to advance our understanding of health and disease
Following the publication of the complete human genomic sequence, the post-genomic era
is driven by the need to extract useful information from genomic data. Genomics …
is driven by the need to extract useful information from genomic data. Genomics …
Global regulatory architecture of human, mouse and rat tissue transcriptomes
A Prasad, SS Kumar, C Dessimoz, S Bleuler, O Laule… - BMC genomics, 2013 - Springer
Background Predicting molecular responses in human by extrapolating results from model
organisms requires a precise understanding of the architecture and regulation of biological …
organisms requires a precise understanding of the architecture and regulation of biological …
Integration of clinical and genomic data: a methodological survey
Human diseases are inherently complex and governed by the complicated interplay of
several underlying factors. Clinical research focuses on behavioral, demographic and …
several underlying factors. Clinical research focuses on behavioral, demographic and …
A computational atlas of tissue-specific regulatory networks
The pattern of how gene co-regulation varies across tissues determines human health.
However, inferring tissue-specific regulatory networks and associating them with human …
However, inferring tissue-specific regulatory networks and associating them with human …
Identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetics
Genome-wide association studies provide a powerful means of identifying loci and genes
contributing to disease, but in many cases, the related cell types/states through which genes …
contributing to disease, but in many cases, the related cell types/states through which genes …
Deep neural network prediction of genome-wide transcriptome signatures–beyond the Black-box
Prediction algorithms for protein or gene structures, including transcription factor binding
from sequence information, have been transformative in understanding gene regulation …
from sequence information, have been transformative in understanding gene regulation …