The body-wide transcriptome landscape of disease models

S Kozawa, R Ueda, K Urayama, F Sagawa, S Endo… - IScience, 2018 - cell.com
Virtually all diseases affect multiple organs. However, our knowledge of the body-wide
effects remains limited. Here, we report the body-wide transcriptome landscape across 13 …

Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits

T Azevedo, GM Dimitri, P Lió… - NPJ systems biology and …, 2021 - nature.com
Here, we performed a comprehensive intra-tissue and inter-tissue multilayer network
analysis of the human transcriptome. We generated an atlas of communities in gene co …

A validated single-cell-based strategy to identify diagnostic and therapeutic targets in complex diseases

DR Gawel, J Serra-Musach, S Lilja, J Aagesen… - Genome medicine, 2019 - Springer
Background Genomic medicine has paved the way for identifying biomarkers and
therapeutically actionable targets for complex diseases, but is complicated by the …

The Gene Expression Landscape of Disease Genes

J García-González, S Garcia-Gonzalez, L Liou… - medRxiv, 2024 - medrxiv.org
Fine-mapping and gene-prioritisation techniques applied to the latest Genome-Wide
Association Study (GWAS) results have prioritised hundreds of genes as causally …

Integrating post-genomic approaches as a strategy to advance our understanding of health and disease

J Tang, CY Tan, M Oresic, A Vidal-Puig - Genome Medicine, 2009 - Springer
Following the publication of the complete human genomic sequence, the post-genomic era
is driven by the need to extract useful information from genomic data. Genomics …

Global regulatory architecture of human, mouse and rat tissue transcriptomes

A Prasad, SS Kumar, C Dessimoz, S Bleuler, O Laule… - BMC genomics, 2013 - Springer
Background Predicting molecular responses in human by extrapolating results from model
organisms requires a precise understanding of the architecture and regulation of biological …

Integration of clinical and genomic data: a methodological survey

S Dey, R Gupta, M Steinbach, V Kumar - 2013 - conservancy.umn.edu
Human diseases are inherently complex and governed by the complicated interplay of
several underlying factors. Clinical research focuses on behavioral, demographic and …

A computational atlas of tissue-specific regulatory networks

C Chen, L Jiang, B Shen, M Wang, CH Griffin… - Frontiers in Systems …, 2021 - frontiersin.org
The pattern of how gene co-regulation varies across tissues determines human health.
However, inferring tissue-specific regulatory networks and associating them with human …

Identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetics

KA Jagadeesh, KK Dey, DT Montoro, R Mohan… - Nature …, 2022 - nature.com
Genome-wide association studies provide a powerful means of identifying loci and genes
contributing to disease, but in many cases, the related cell types/states through which genes …

Deep neural network prediction of genome-wide transcriptome signatures–beyond the Black-box

R Magnusson, JN Tegnér, M Gustafsson - NPJ systems biology and …, 2022 - nature.com
Prediction algorithms for protein or gene structures, including transcription factor binding
from sequence information, have been transformative in understanding gene regulation …