Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data
R Serra Mari, S Schrinner, R Finkers, FMR Ziegler… - Genome Biology, 2024 - Springer
Potato is one of the world's major staple crops, and like many important crop plants, it has a
polyploid genome. Polyploid haplotype assembly poses a major computational challenge …
polyploid genome. Polyploid haplotype assembly poses a major computational challenge …
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut
DJ Bertioli, SB Cannon, L Froenicke, G Huang… - Nature …, 2016 - nature.com
Cultivated peanut (Arachis hypogaea) is an allotetraploid with closely related subgenomes
of a total size of∼ 2.7 Gb. This makes the assembly of chromosomal pseudomolecules very …
of a total size of∼ 2.7 Gb. This makes the assembly of chromosomal pseudomolecules very …
Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding
D Fonceka, HA Tossim, R Rivallan, H Vignes, I Faye… - BMC Plant …, 2012 - Springer
Background Polyploidy can result in genetic bottlenecks, especially for species of
monophyletic origin. Cultivated peanut is an allotetraploid harbouring limited genetic …
monophyletic origin. Cultivated peanut is an allotetraploid harbouring limited genetic …
Genomic in situ hybridization reveals both auto- and allopolyploid origins of different North and Central American hexaploid potato (Solanum sect. Petota) species
G Pendinen, DM Spooner, J Jiang, T Gavrilenko - Genome, 2012 - cdnsciencepub.com
Wild potato (Solanum L. sect. Petota Dumort.) species contain diploids (2 n= 2 x= 24) to
hexaploids (2 n= 6 x= 72). JG Hawkes classified all hexaploid Mexican species in series …
hexaploids (2 n= 6 x= 72). JG Hawkes classified all hexaploid Mexican species in series …
Subgenome evolution in allotetraploid plants
M Schiavinato, A Bodrug‐Schepers, JC Dohm… - The Plant …, 2021 - Wiley Online Library
Polyploidization is a well‐known speciation and adaptation mechanism. Traces of former
polyploidization events were discovered within many genomes, and especially in plants …
polyploidization events were discovered within many genomes, and especially in plants …
Challenges of genotyping polyploid species
AS Mason - Plant Genotyping: Methods and Protocols, 2015 - Springer
Most plant species are known to be either ancient or recent polyploids, containing more than
one genome as a result of past interspecific hybridization events (allopolyploidy) and/or …
one genome as a result of past interspecific hybridization events (allopolyploidy) and/or …
Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota)
Background Recent genomic studies have drastically altered our knowledge of polyploid
evolution. Wild potatoes (Solanum section Petota) are a highly diverse and economically …
evolution. Wild potatoes (Solanum section Petota) are a highly diverse and economically …
Acquisition of deleterious mutations during potato polyploidization
Potatoes (Solanum tuberosum L.) represent an important tuber crop, worldwide. During its
prolonged clonal propagation, numerous deleterious mutations have accumulated in the …
prolonged clonal propagation, numerous deleterious mutations have accumulated in the …
Extensive homoeologous genome exchanges in allopolyploid crops revealed by mRNA seq‐based visualization
Polyploidy, the possession of multiple sets of chromosomes, has been a predominant factor
in the evolution and success of the angiosperms. Although artificially formed allopolyploids …
in the evolution and success of the angiosperms. Although artificially formed allopolyploids …
The formation and evolution of polyploid genomes in plants
Y Ji - Journal of Systematics and Evolution, 2001 - jse.ac.cn
Polyploidy is widely acknowledged as a major mechanism of adaptation and speciation in
plants. Recent estimates suggest that 70% of all angiosperms have experienced one or …
plants. Recent estimates suggest that 70% of all angiosperms have experienced one or …