Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data

R Serra Mari, S Schrinner, R Finkers, FMR Ziegler… - Genome Biology, 2024 - Springer
Potato is one of the world's major staple crops, and like many important crop plants, it has a
polyploid genome. Polyploid haplotype assembly poses a major computational challenge …

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

DJ Bertioli, SB Cannon, L Froenicke, G Huang… - Nature …, 2016 - nature.com
Cultivated peanut (Arachis hypogaea) is an allotetraploid with closely related subgenomes
of a total size of∼ 2.7 Gb. This makes the assembly of chromosomal pseudomolecules very …

Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding

D Fonceka, HA Tossim, R Rivallan, H Vignes, I Faye… - BMC Plant …, 2012 - Springer
Background Polyploidy can result in genetic bottlenecks, especially for species of
monophyletic origin. Cultivated peanut is an allotetraploid harbouring limited genetic …

Genomic in situ hybridization reveals both auto- and allopolyploid origins of different North and Central American hexaploid potato (Solanum sect. Petota) species

G Pendinen, DM Spooner, J Jiang, T Gavrilenko - Genome, 2012 - cdnsciencepub.com
Wild potato (Solanum L. sect. Petota Dumort.) species contain diploids (2 n= 2 x= 24) to
hexaploids (2 n= 6 x= 72). JG Hawkes classified all hexaploid Mexican species in series …

Subgenome evolution in allotetraploid plants

M Schiavinato, A Bodrug‐Schepers, JC Dohm… - The Plant …, 2021 - Wiley Online Library
Polyploidization is a well‐known speciation and adaptation mechanism. Traces of former
polyploidization events were discovered within many genomes, and especially in plants …

Challenges of genotyping polyploid species

AS Mason - Plant Genotyping: Methods and Protocols, 2015 - Springer
Most plant species are known to be either ancient or recent polyploids, containing more than
one genome as a result of past interspecific hybridization events (allopolyploidy) and/or …

Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota)

D Cai, F Rodríguez, Y Teng, C Ané… - BMC evolutionary …, 2012 - Springer
Background Recent genomic studies have drastically altered our knowledge of polyploid
evolution. Wild potatoes (Solanum section Petota) are a highly diverse and economically …

Acquisition of deleterious mutations during potato polyploidization

Q Lian, D Tang, Z Bai, J Qi, F Lu… - Journal of integrative …, 2019 - Wiley Online Library
Potatoes (Solanum tuberosum L.) represent an important tuber crop, worldwide. During its
prolonged clonal propagation, numerous deleterious mutations have accumulated in the …

Extensive homoeologous genome exchanges in allopolyploid crops revealed by mRNA seq‐based visualization

Z He, L Wang, AL Harper, L Havlickova… - Plant biotechnology …, 2017 - Wiley Online Library
Polyploidy, the possession of multiple sets of chromosomes, has been a predominant factor
in the evolution and success of the angiosperms. Although artificially formed allopolyploids …

The formation and evolution of polyploid genomes in plants

Y Ji - Journal of Systematics and Evolution, 2001 - jse.ac.cn
Polyploidy is widely acknowledged as a major mechanism of adaptation and speciation in
plants. Recent estimates suggest that 70% of all angiosperms have experienced one or …