Synthesis of 3 '-3 '-Linked Oligonucleotides Branched by a Pentaerythritol Linker and the Thermal Stabilities of the Triplexes with Single-Stranded DNA or RNA

Y Ueno, A Shibata, A Matsuda, Y Kitade - Bioconjugate chemistry, 2003 - ACS Publications
Synthesis of 3 '-3 '-linked oligonucleotides branched by a pentaerythritol linker is described.
The branched oligonucleotides were synthesized on a DNA/RNA synthesizer using a …

Double-stranded oligonucleotides containing 5-aminomethyl-2′-deoxyuridine form thermostable anti-parallel triplexes with single-stranded DNA or RNA

A Shibata, Y Ueno, M Iwata, H Wakita… - Bioorganic & medicinal …, 2012 - Elsevier
This Letter describes the synthesis and properties of double-stranded antisense
oligonucleotides connected with a pentaerythritol linker. We found that double-stranded …

Triplex-forming ability of modified oligonucleotides

TH⊘ jland, BR Babu, T Bryld… - … , Nucleotides, and Nucleic …, 2007 - Taylor & Francis
We present our studies on the ability of several different nucleotide analogs as triplex-
forming oligonucleotides. The modifications tested include 4′-C-hydroxymethyl, LNA, 2 …

Synthesis and properties of triple helix-forming oligodeoxyribonucleotides containing 7-chloro-7-deaza-2′-deoxyguanosine

Y Aubert, L Perrouault, C Hélène… - Bioorganic & medicinal …, 2001 - Elsevier
Multiple incorporations of 7-chloro-7-deaza-2′-deoxyguanosine in place of 2′-
deoxyguanosine have been performed into a triple helix-forming oligodeoxyribonucleotide …

Nucleosides and Nucleotides. 208. Alternate-Strand Triple-Helix Formation by the 3 '-3 '-Linked Oligodeoxynucleotides with the Anthraquinonyl Group at the Junction …

Y Ueno, M Mikawa, S Hoshika… - Bioconjugate Chemistry, 2001 - ACS Publications
The synthesis of 3 '-3 '-linked oligodeoxynucleotides (ODNs) with the anthraquinonyl group
at the junction point is described. The ODNs were synthesized on a DNA synthesizer using a …

Nucleosides and nucleotides. 162. Facile synthesis of 5′-5′-linked oligodeoxyribonucleotides with the potential for triple-helix formation

Y Ueno, A Ogawa, A Nakagawa, A Matsuda - Bioorganic & Medicinal …, 1996 - Elsevier
The facile synthesis of 5′-5′-linked oligodeoxyribonucleotides (ODNs) with the potential
for triple-helix formation is described. ODNs containing 5-trifluoroethoxycarbonyl-2 …

5′-5′ Tethered oligonucleotides via nucleic bases: a potential new set of compounds for alternate strand triple-helix formation

U Asseline, NT Thuong - Tetrahedron letters, 1994 - Elsevier
The solid-phase synthesis of 5′-5′-linked oligonucleotides tethered via nucleic bases and
with opposite polarities has been performed using a modified dinucleoside bearing a …

2′-O, 4′-C-Methylene bridged nucleic acid (2′, 4′-BNA): synthesis and triplex-forming properties

S Obika, T Uneda, T Sugimoto, D Nanbu… - Bioorganic & medicinal …, 2001 - Elsevier
For development of ideal antisense and antigene molecules, various chemical modifications
of oligonucleotides have been studied. However, despite their importance, there is only …

Stabilization of DNA triplexes by dangling aromatic residues

M Kubota, A Ono - Tetrahedron letters, 2004 - Elsevier
Novel nucleoside analogues containing 2′-deoxyinosine and aromatic rings, which are
connected by short linker groups, were synthesized and incorporated into …

Nucleosides and nucleotides. Part 226: Alternate-strand triple-helix formation by 3′-3′-linked oligodeoxynucleotides composed of asymmetrical sequences

S Hoshika, Y Ueno, H Kamiya, A Matsuda - Bioorganic & medicinal …, 2004 - Elsevier
In this paper, we describe the synthesis of the 3′-3′-linked oligonucleotides connected
with pentaerythritol composed of asymmetrical sequences. Stability of the triplexes between …