Peptides composed of alternating L-and D-amino acids inhibit amyloidogenesis in three distinct amyloid systems independent of sequence

J Kellock, G Hopping, B Caughey, V Daggett - Journal of molecular biology, 2016 - Elsevier
There is now substantial evidence that soluble oligomers are primary toxic agents in amyloid
diseases. The development of an antibody recognizing the toxic soluble oligomeric forms of …

Designed α-sheet peptides inhibit amyloid formation by targeting toxic oligomers

G Hopping, J Kellock, RP Barnwal, P Law, J Bryers… - Elife, 2014 - elifesciences.org
Previous studies suggest that the toxic soluble-oligomeric form of different amyloid proteins
share a common backbone conformation, but the amorphous nature of this oligomer …

[HTML][HTML] Focus: medical technology: the role of α-sheet in amyloid oligomer aggregation and toxicity

TM Bi, V Daggett - The Yale Journal of Biology and Medicine, 2018 - ncbi.nlm.nih.gov
A major barrier to developing effective treatments and diagnostics for amyloid diseases is
the inability of traditional protein structure characterization methods to elucidate the structure …

A molecular dynamics study of the interaction of D-peptide amyloid inhibitors with their target sequence reveals a potential inhibitory pharmacophore conformation

A Esteras-Chopo, G Morra, E Moroni, L Serrano… - Journal of molecular …, 2008 - Elsevier
The self-assembly of soluble proteins and peptides into β-sheet-rich oligomeric structures
and insoluble fibrils is a hallmark of a large number of human diseases known as amyloid …

Chemical and Physical Variability in Structural Isomers of an l/d α-Sheet Peptide Designed To Inhibit Amyloidogenesis

NL Maris, D Shea, A Bleem, JD Bryers, V Daggett - Biochemistry, 2018 - ACS Publications
There has been much interest in synthetic peptides as inhibitors of aggregation associated
with amyloid diseases. Of particular interest are compounds that target the cytotoxic soluble …

Molecular dynamics simulations of alanine rich β‐sheet oligomers: Insight into amyloid formation

B Ma, R Nussinov - Protein Science, 2002 - Wiley Online Library
The aggregation observed in protein conformational diseases is the outcome of significant
new β‐sheet structure not present in the native state. Peptide model systems have been …

Elongation of ordered peptide aggregate of an amyloidogenic hexapeptide NFGAIL observed in molecular dynamics simulations with explicit solvent

C Wu, H Lei, Y Duan - Journal of the American Chemical Society, 2005 - ACS Publications
The mechanisms by which amyloidogenic peptides and proteins form soluble toxic
oligomers remain elusive. We have studied the formation of partially ordered tetramers and …

A hairpin motif in the amyloid-β peptide is important for formation of disease-related oligomers

M Khaled, I Rönnbäck, LL Ilag… - Journal of the …, 2023 - ACS Publications
The amyloid-β (Aβ) peptide is associated with the development of Alzheimer's disease and
is known to form highly neurotoxic prefibrillar oligomeric aggregates, which are difficult to …

α-Sheet: the toxic conformer in amyloid diseases?

V Daggett - Accounts of chemical research, 2006 - ACS Publications
A novel secondary structure, the α-sheet, was identified through molecular dynamics (MD)
simulations of various proteins associated with amyloid diseases under amyloidogenic …

Aliphatic peptides show similar self-assembly to amyloid core sequences, challenging the importance of aromatic interactions in amyloidosis

A Lakshmanan, DW Cheong… - Proceedings of the …, 2013 - National Acad Sciences
The self-assembly of abnormally folded proteins into amyloid fibrils is a hallmark of many
debilitating diseases, from Alzheimer's and Parkinson diseases to prion-related disorders …