On the selection of appropriate distances for gene expression data clustering

PA Jaskowiak, RJGB Campello, IG Costa - BMC bioinformatics, 2014 - Springer
Background Clustering is crucial for gene expression data analysis. As an unsupervised
exploratory procedure its results can help researchers to gain insights and formulate new …

Cluster analysis for gene expression data: a survey

D Jiang, C Tang, A Zhang - IEEE Transactions on knowledge …, 2004 - ieeexplore.ieee.org
DNA microarray technology has now made it possible to simultaneously monitor the
expression levels of thousands of genes during important biological processes and across …

Evaluation and comparison of gene clustering methods in microarray analysis

A Thalamuthu, I Mukhopadhyay, X Zheng… - …, 2006 - academic.oup.com
Motivation: Microarray technology has been widely applied in biological and clinical studies
for simultaneous monitoring of gene expression in thousands of genes. Gene clustering …

[HTML][HTML] Clustering approaches to identifying gene expression patterns from DNA microarray data

JH Do, DK Choi - Molecules and cells, 2008 - Elsevier
The analysis of microarray data is essential for large amounts of gene expression data. In
this review we focus on clustering techniques. The biological rationale for this approach is …

Proximity measures for clustering gene expression microarray data: a validation methodology and a comparative analysis

PA Jaskowiak, RJGB Campello… - IEEE/ACM transactions …, 2013 - ieeexplore.ieee.org
Cluster analysis is usually the first step adopted to unveil information from gene expression
microarray data. Besides selecting a clustering algorithm, choosing an appropriate proximity …

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes

S Datta, S Datta - BMC bioinformatics, 2006 - Springer
Background A cluster analysis is the most commonly performed procedure (often regarded
as a first step) on a set of gene expression profiles. In most cases, a post hoc analysis is …

Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data

D Huang, W Pan - Bioinformatics, 2006 - academic.oup.com
Motivation: Because co-expressed genes are likely to share the same biological function,
cluster analysis of gene expression profiles has been applied for gene function discovery …

Clustering methods for microarray gene expression data

N Belacel, Q Wang, M Cuperlovic-Culf - Omics: a journal of …, 2006 - liebertpub.com
Within the field of genomics, microarray technologies have become a powerful technique for
simultaneously monitoring the expression patterns of thousands of genes under different …

Comparisons and validation of statistical clustering techniques for microarray gene expression data

S Datta, S Datta - Bioinformatics, 2003 - academic.oup.com
Motivation: With the advent of microarray chip technology, large data sets are emerging
containing the simultaneous expression levels of thousands of genes at various time points …

Clustering cancer gene expression data: a comparative study

MCP De Souto, IG Costa, DSA de Araujo… - BMC …, 2008 - Springer
Background The use of clustering methods for the discovery of cancer subtypes has drawn a
great deal of attention in the scientific community. While bioinformaticians have proposed …