On the selection of appropriate distances for gene expression data clustering
Background Clustering is crucial for gene expression data analysis. As an unsupervised
exploratory procedure its results can help researchers to gain insights and formulate new …
exploratory procedure its results can help researchers to gain insights and formulate new …
Cluster analysis for gene expression data: a survey
DNA microarray technology has now made it possible to simultaneously monitor the
expression levels of thousands of genes during important biological processes and across …
expression levels of thousands of genes during important biological processes and across …
Evaluation and comparison of gene clustering methods in microarray analysis
A Thalamuthu, I Mukhopadhyay, X Zheng… - …, 2006 - academic.oup.com
Motivation: Microarray technology has been widely applied in biological and clinical studies
for simultaneous monitoring of gene expression in thousands of genes. Gene clustering …
for simultaneous monitoring of gene expression in thousands of genes. Gene clustering …
[HTML][HTML] Clustering approaches to identifying gene expression patterns from DNA microarray data
JH Do, DK Choi - Molecules and cells, 2008 - Elsevier
The analysis of microarray data is essential for large amounts of gene expression data. In
this review we focus on clustering techniques. The biological rationale for this approach is …
this review we focus on clustering techniques. The biological rationale for this approach is …
Proximity measures for clustering gene expression microarray data: a validation methodology and a comparative analysis
PA Jaskowiak, RJGB Campello… - IEEE/ACM transactions …, 2013 - ieeexplore.ieee.org
Cluster analysis is usually the first step adopted to unveil information from gene expression
microarray data. Besides selecting a clustering algorithm, choosing an appropriate proximity …
microarray data. Besides selecting a clustering algorithm, choosing an appropriate proximity …
Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes
Background A cluster analysis is the most commonly performed procedure (often regarded
as a first step) on a set of gene expression profiles. In most cases, a post hoc analysis is …
as a first step) on a set of gene expression profiles. In most cases, a post hoc analysis is …
Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data
D Huang, W Pan - Bioinformatics, 2006 - academic.oup.com
Motivation: Because co-expressed genes are likely to share the same biological function,
cluster analysis of gene expression profiles has been applied for gene function discovery …
cluster analysis of gene expression profiles has been applied for gene function discovery …
Clustering methods for microarray gene expression data
N Belacel, Q Wang, M Cuperlovic-Culf - Omics: a journal of …, 2006 - liebertpub.com
Within the field of genomics, microarray technologies have become a powerful technique for
simultaneously monitoring the expression patterns of thousands of genes under different …
simultaneously monitoring the expression patterns of thousands of genes under different …
Comparisons and validation of statistical clustering techniques for microarray gene expression data
Motivation: With the advent of microarray chip technology, large data sets are emerging
containing the simultaneous expression levels of thousands of genes at various time points …
containing the simultaneous expression levels of thousands of genes at various time points …
Clustering cancer gene expression data: a comparative study
Background The use of clustering methods for the discovery of cancer subtypes has drawn a
great deal of attention in the scientific community. While bioinformaticians have proposed …
great deal of attention in the scientific community. While bioinformaticians have proposed …