Protein–ligand docking using differential evolution with an adaptive mechanism
The protein–ligand docking problem plays a crucial role in the drug discovery process and
remains challenging in bioinformatics. A successful protein–ligand docking approach …
remains challenging in bioinformatics. A successful protein–ligand docking approach …
An efficient ABC_DE_based hybrid algorithm for protein–ligand docking
B Guan, C Zhang, Y Zhao - International journal of molecular sciences, 2018 - mdpi.com
Protein–ligand docking is a process of searching for the optimal binding conformation
between the receptor and the ligand. Automated docking plays an important role in drug …
between the receptor and the ligand. Automated docking plays an important role in drug …
Autodock koto: a gradient boosting differential evolution for molecular docking
Molecular docking plays a vital role in modern drug discovery, by supporting predictions of
the binding modes and affinities of ligands at the binding site of target proteins. Several …
the binding modes and affinities of ligands at the binding site of target proteins. Several …
Genetic algorithm with a crossover elitist preservation mechanism for protein–ligand docking
B Guan, C Zhang, J Ning - Amb Express, 2017 - Springer
Protein–ligand docking plays an important role in computer-aided pharmaceutical
development. Protein–ligand docking can be defined as a search algorithm with a scoring …
development. Protein–ligand docking can be defined as a search algorithm with a scoring …
Self-adaptive differential evolution algorithm incorporating local search for protein-ligand docking
HW Chung, SJ Cho, KR Lee… - Journal of Physics …, 2013 - iopscience.iop.org
Differential Evolution (DE) algorithm is powerful in optimization problems over several real
parameters. DE depends on strategies to generate new trial solutions and the associated …
parameters. DE depends on strategies to generate new trial solutions and the associated …
A hybrid cuckoo search and differential evolution approach to protein–ligand docking
H Lin, SWI Siu - International Journal of Molecular Sciences, 2018 - mdpi.com
Protein–ligand docking is a molecular modeling technique that is used to predict the
conformation of a small molecular ligand at the binding pocket of a protein receptor. There …
conformation of a small molecular ligand at the binding pocket of a protein receptor. There …
Molecular docking with opposition-based differential evolution
M Koohi-Moghadam, AT Rahmani - Proceedings of the 27th annual ACM …, 2012 - dl.acm.org
Computer simulation of binding a small molecule (ligand) to the protein receptor is one of
the most important issues in present drug design research. The goal of this procedure is to …
the most important issues in present drug design research. The goal of this procedure is to …
Efficient protein-ligand docking using sustainable evolutionary algorithm
AutoDock is a widely used automated protein docking program in structure-based drug-
design. Different search algorithms, such as Simulated Annealing, traditional Genetic …
design. Different search algorithms, such as Simulated Annealing, traditional Genetic …
EDGA: a population evolution direction-guided genetic algorithm for protein–ligand docking
B Guan, C Zhang, J Ning - Journal of Computational Biology, 2016 - liebertpub.com
Protein–ligand docking can be formulated as a search algorithm associated with an
accurate scoring function. However, most current search algorithms cannot show good …
accurate scoring function. However, most current search algorithms cannot show good …
HIGA: a running history information guided genetic algorithm for protein–ligand docking
B Guan, C Zhang, Y Zhao - Molecules, 2017 - mdpi.com
Protein-ligand docking is an essential part of computer-aided drug design, and it identifies
the binding patterns of proteins and ligands by computer simulation. Though Lamarckian …
the binding patterns of proteins and ligands by computer simulation. Though Lamarckian …