Plastid genome sequencing, comparative genomics, and phylogenomics: current status and prospects

L Gao, YJ SU, T Wang - Journal of Systematics and Evolution, 2010 - Wiley Online Library
More than 190 plastid genomes have been completely sequenced during the past two
decades due to advances in DNA sequencing technologies. Based on this unprecedented …

Plastid phylogenomics and green plant phylogeny: almost full circle but not quite there

CC Davis, Z Xi, S Mathews - BMC biology, 2014 - Springer
A study in BMC Evolutionary Biology represents the most comprehensive effort to clarify the
phylogeny of green plants using sequences from the plastid genome. This study highlights …

Plastid genome structure and phylogenomics of Nymphaeales: conserved gene order and new insights into relationships

M Gruenstaeudl, L Nauheimer, T Borsch - Plant systematics and evolution, 2017 - Springer
The plastid genomes of early-diverging angiosperms were among the first land plant
plastomes investigated. Despite their importance to understanding angiosperm evolution, no …

Plastid genomes of seed plants

RK Jansen, TA Ruhlman - Genomics of chloroplasts and mitochondria, 2012 - Springer
The field of comparative plastid genomics has burgeoned during the past decade, largely
due to the availability of rapid, less expensive genome sequencing technologies. Currently …

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

M Parks, R Cronn, A Liston - BMC biology, 2009 - Springer
Background Molecular evolutionary studies share the common goal of elucidating historical
relationships, and the common challenge of adequately sampling taxa and characters …

Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences

H Nozaki, N Ohta, M Matsuzaki, O Misumi… - Journal of molecular …, 2003 - Springer
Based on the recent hypothesis on the origin of eukaryotic phototrophs, red algae, green
plants, and glaucophytes constitute the “primary photosynthetic eukaryotes”(whose plastids …

[HTML][HTML] Comparative analyses of 3,654 plastid genomes unravel insights into evolutionary dynamics and phylogenetic discordance of green plants

T Yang, SK Sahu, L Yang, Y Liu, W Mu, X Liu… - Frontiers in Plant …, 2022 - frontiersin.org
The plastid organelle is essential for many vital cellular processes and the growth and
development of plants. The availability of a large number of complete plastid genomes could …

Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve …

F Grewe, W Guo, EA Gubbels, AK Hansen… - BMC Evolutionary …, 2013 - Springer
Background Plastid genome structure and content is remarkably conserved in land plants.
This widespread conservation has facilitated taxon-rich phylogenetic analyses that have …

Sequencing angiosperm plastid genomes made easy: a complete set of universal primers and a case study on the phylogeny of Saxifragales

W Dong, C Xu, T Cheng, K Lin… - Genome biology and …, 2013 - academic.oup.com
Plastid genomes are an invaluable resource for plant biological studies. However, the
number of completely sequenced plant plastid genomes is still small compared with the vast …

Advances in phylogenomics based on complete chloroplast genomes

Z Yun-Jie, LI De-Zhu - Plant Diversity, 2011 - journal.kib.ac.cn
Phylogenomics is a new synthesized discipline which combines genomics with
phylogenetics. Phylogenomics based on chloroplast genomes has shown many great …