Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems

CH Schilling, JS Edwards, D Letscher… - Biotechnology and …, 2000 - Wiley Online Library
The elucidation of organism‐scale metabolic networks necessitates the development of
integrative methods to analyze and interpret the systemic properties of cellular metabolism …

Comparing methods for metabolic network analysis and an application to metabolic engineering

N Tomar, RK De - Gene, 2013 - Elsevier
Bioinformatics tools have facilitated the reconstruction and analysis of cellular metabolism of
various organisms based on information encoded in their genomes. Characterization of …

Genome-scale modeling for metabolic engineering

E Simeonidis, ND Price - Journal of Industrial Microbiology and …, 2015 - academic.oup.com
We focus on the application of constraint-based methodologies and, more specifically, flux
balance analysis in the field of metabolic engineering, and enumerate recent developments …

Metabolic engineering—Integrating methodologies of molecular breeding and bioprocess systems engineering

H Shimizu - Journal of bioscience and bioengineering, 2002 - Elsevier
Metabolic engineering is an integrating methodology of analysis and synthesis for the
improvement of flux distribution of metabolic pathways in complicated bioprocesses, which …

Towards kinetic modeling of genome‐scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints

A Chakrabarti, L Miskovic, KC Soh… - Biotechnology …, 2013 - Wiley Online Library
Mathematical modeling is an essential tool for the comprehensive understanding of cell
metabolism and its interactions with the environmental and process conditions. Recent …

Uses of multi-objective flux analysis for optimization of microbial production of secondary metabolites

M Griesemer, A Navid - Microorganisms, 2023 - mdpi.com
Secondary metabolites are not essential for the growth of microorganisms, but they play a
critical role in how microbes interact with their surroundings. In addition to this important …

[图书][B] Pathway analysis and optimization in metabolic engineering

NV Torres, EO Voit - 2002 - books.google.com
Facility in the targeted manipulation of the genetic and metabolic composition of organisms,
combined with unprecedented computational power, is forging a niche for a new …

Metabolic engineering

G Stephanopoulos - Current Opinion in Biotechnology, 1994 - Elsevier
Metabolic engineering is not another form of classic manipulation of intermediary
metabolism; rather, it is the purposeful design of metabolic networks. The metabolic …

Development of network-based pathway definitions: the need to analyze real metabolic networks

BO Palsson, ND Price, JA Papin - TRENDS in Biotechnology, 2003 - cell.com
A recent article [1] addresses the important issue of network-based metabolic pathway
analysis. Various methods have been used to define systemic pathways for metabolic …

Model validation and selection in metabolic flux analysis and flux balance analysis

JAM Kaste, Y Shachar‐Hill - Biotechnology Progress, 2024 - Wiley Online Library
Abstract 13C‐Metabolic Flux Analysis (13C‐MFA) and Flux Balance Analysis (FBA) are
widely used to investigate the operation of biochemical networks in both biological and …