Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
The elucidation of organism‐scale metabolic networks necessitates the development of
integrative methods to analyze and interpret the systemic properties of cellular metabolism …
integrative methods to analyze and interpret the systemic properties of cellular metabolism …
Comparing methods for metabolic network analysis and an application to metabolic engineering
Bioinformatics tools have facilitated the reconstruction and analysis of cellular metabolism of
various organisms based on information encoded in their genomes. Characterization of …
various organisms based on information encoded in their genomes. Characterization of …
Genome-scale modeling for metabolic engineering
E Simeonidis, ND Price - Journal of Industrial Microbiology and …, 2015 - academic.oup.com
We focus on the application of constraint-based methodologies and, more specifically, flux
balance analysis in the field of metabolic engineering, and enumerate recent developments …
balance analysis in the field of metabolic engineering, and enumerate recent developments …
Metabolic engineering—Integrating methodologies of molecular breeding and bioprocess systems engineering
H Shimizu - Journal of bioscience and bioengineering, 2002 - Elsevier
Metabolic engineering is an integrating methodology of analysis and synthesis for the
improvement of flux distribution of metabolic pathways in complicated bioprocesses, which …
improvement of flux distribution of metabolic pathways in complicated bioprocesses, which …
Towards kinetic modeling of genome‐scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints
Mathematical modeling is an essential tool for the comprehensive understanding of cell
metabolism and its interactions with the environmental and process conditions. Recent …
metabolism and its interactions with the environmental and process conditions. Recent …
Uses of multi-objective flux analysis for optimization of microbial production of secondary metabolites
M Griesemer, A Navid - Microorganisms, 2023 - mdpi.com
Secondary metabolites are not essential for the growth of microorganisms, but they play a
critical role in how microbes interact with their surroundings. In addition to this important …
critical role in how microbes interact with their surroundings. In addition to this important …
[图书][B] Pathway analysis and optimization in metabolic engineering
Facility in the targeted manipulation of the genetic and metabolic composition of organisms,
combined with unprecedented computational power, is forging a niche for a new …
combined with unprecedented computational power, is forging a niche for a new …
Metabolic engineering
G Stephanopoulos - Current Opinion in Biotechnology, 1994 - Elsevier
Metabolic engineering is not another form of classic manipulation of intermediary
metabolism; rather, it is the purposeful design of metabolic networks. The metabolic …
metabolism; rather, it is the purposeful design of metabolic networks. The metabolic …
Development of network-based pathway definitions: the need to analyze real metabolic networks
A recent article [1] addresses the important issue of network-based metabolic pathway
analysis. Various methods have been used to define systemic pathways for metabolic …
analysis. Various methods have been used to define systemic pathways for metabolic …
Model validation and selection in metabolic flux analysis and flux balance analysis
JAM Kaste, Y Shachar‐Hill - Biotechnology Progress, 2024 - Wiley Online Library
Abstract 13C‐Metabolic Flux Analysis (13C‐MFA) and Flux Balance Analysis (FBA) are
widely used to investigate the operation of biochemical networks in both biological and …
widely used to investigate the operation of biochemical networks in both biological and …