Digital genotyping of sorghum–a diverse plant species with a large repeat-rich genome

DT Morishige, PE Klein, JL Hilley, SME Sahraeian… - Bmc Genomics, 2013 - Springer
Background Rapid acquisition of accurate genotyping information is essential for all genetic
marker-based studies. For species with relatively small genomes, complete genome …

Construction of a high-density genetic map using specific-locus amplified fragments in sorghum

G Ji, Q Zhang, R Du, P Lv, X Ma, S Fan, S Li, S Hou… - BMC genomics, 2017 - Springer
Background Sorghum is mainly used as a human food and beverage source, playing an
important role in the production of ethanol and other bio-industrial products. Thus it is …

Genotyping by Sequencing of 393 Sorghum bicolor BTx623 × IS3620C Recombinant Inbred Lines Improves Sensitivity and Resolution of QTL Detection

WQ Kong, C Kim, D Zhang, H Guo, X Tan… - G3: Genes …, 2018 - academic.oup.com
We describe a genetic map with a total of 381 bins of 616 genotyping by sequencing (GBS)-
based SNP markers in a F6-F8 recombinant inbred line (RIL) population of 393 individuals …

Sorghum Association Panel whole‐genome sequencing establishes cornerstone resource for dissecting genomic diversity

JL Boatwright, S Sapkota, H Jin, JC Schnable… - The Plant …, 2022 - Wiley Online Library
Association mapping panels represent foundational resources for understanding the genetic
basis of phenotypic diversity and serve to advance plant breeding by exploring genetic …

High‐throughput genomics in sorghum: from whole‐genome resequencing to a SNP screening array

WA Bekele, S Wieckhorst, W Friedt… - Plant Biotechnology …, 2013 - Wiley Online Library
With its small, diploid and completely sequenced genome, sorghum (S orghum bicolor L. M
oench) is highly amenable to genomics‐based breeding approaches. Here, we describe the …

Recent advancements in the breeding of sorghum crop: current status and future strategies for marker-assisted breeding

FS Baloch, MT Altaf, W Liaqat, M Bedir… - Frontiers in …, 2023 - frontiersin.org
Sorghum is emerging as a model crop for functional genetics and genomics of tropical
grasses with abundant uses, including food, feed, and fuel, among others. It is currently the …

In silico mapping of important genes and markers available in the public domain for efficient sorghum breeding

P Ramu, SP Deshpande, S Senthilvel, B Jayashree… - Molecular …, 2010 - Springer
Crop genome sequencing projects generate massive amounts of genomic sequence
information, and the utilization of this information in applied crop improvement programs has …

A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers

ES Mace, JF Rami, S Bouchet, PE Klein, RR Klein… - BMC plant biology, 2009 - Springer
Background Sorghum genome mapping based on DNA markers began in the early 1990s
and numerous genetic linkage maps of sorghum have been published in the last decade …

Exploring the sorghum race level diversity utilizing 272 sorghum accessions genomic resources

P Ruperao, P Gandham, DA Odeny, S Mayes… - Frontiers in Plant …, 2023 - frontiersin.org
Due to evolutionary divergence, sorghum race populations exhibit significant genetic and
morphological variation. A k-mer-based sorghum race sequence comparison identified the …

DArT markers: diversity analyses and mapping in Sorghum bicolor

ES Mace, L Xia, DR Jordan, K Halloran, DK Parh… - BMC genomics, 2008 - Springer
Background The sequential nature of gel-based marker systems entails low throughput and
high costs per assay. Commonly used marker systems such as SSR and SNP are also …