Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution

P Sahlén, I Abdullayev, D Ramsköld, L Matskova… - Genome biology, 2015 - Springer
Although the locations of promoters and enhancers have been identified in several cell
types, we still have limited information on their connectivity. We developed HiCap, which …

Enhancer and super‐enhancer: Positive regulators in gene transcription

Y Peng, Y Zhang - Animal models and experimental medicine, 2018 - Wiley Online Library
Enhancer is a positive regulator for spatiotemporal development in eukaryotes. As a cluster,
super‐enhancer is closely related to cell identity‐and fate‐determined processes. Both of …

Transcription factors: from enhancer binding to developmental control

F Spitz, EEM Furlong - Nature reviews genetics, 2012 - nature.com
Developmental progression is driven by specific spatiotemporal domains of gene
expression, which give rise to stereotypically patterned embryos even in the presence of …

Decreased enhancer-promoter proximity accompanying enhancer activation

NS Benabdallah, I Williamson, RS Illingworth, L Kane… - Molecular cell, 2019 - cell.com
Enhancers can regulate the promoters of their target genes over very large genomic
distances. It is widely assumed that mechanisms of enhancer action involve the …

[HTML][HTML] Comprehensive analysis of a cis-regulatory region reveals pleiotropy in enhancer function

EPB Noon, G Sabarís, DM Ortiz, J Sager, A Liebowitz… - Cell reports, 2018 - cell.com
Developmental genes can have complex cis-regulatory regions with multiple enhancers.
Early work revealed remarkable modularity of enhancers, whereby distinct DNA regions …

Promoter-enhancer communication occurs primarily within insulated neighborhoods

F Sun, C Chronis, M Kronenberg, XF Chen, T Su… - Molecular cell, 2019 - cell.com
Metazoan chromosomes are sequentially partitioned into topologically associating domains
(TADs) and then into smaller sub-domains. One class of sub-domains, insulated …

Complex multi-enhancer contacts captured by genome architecture mapping

RA Beagrie, A Scialdone, M Schueler, DCA Kraemer… - Nature, 2017 - nature.com
The organization of the genome in the nucleus and the interactions of genes with their
regulatory elements are key features of transcriptional control and their disruption can cause …

Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells

P Freire-Pritchett, S Schoenfelder, C Várnai… - Elife, 2017 - elifesciences.org
Long-range cis-regulatory elements such as enhancers coordinate cell-specific
transcriptional programmes by engaging in DNA looping interactions with target promoters …

Remote control of gene transcription

AG West, P Fraser - Human molecular genetics, 2005 - academic.oup.com
In this review, we look at the most recent studies of DNA elements that function over long
genomic distances to regulate gene transcription and will discuss the mechanisms genes …

3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages

D Murphy, E Salataj, DC Di Giammartino… - Nature Structural & …, 2024 - nature.com
Mammalian embryogenesis commences with two pivotal and binary cell fate decisions that
give rise to three essential lineages: the trophectoderm, the epiblast and the primitive …