Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution
P Sahlén, I Abdullayev, D Ramsköld, L Matskova… - Genome biology, 2015 - Springer
Although the locations of promoters and enhancers have been identified in several cell
types, we still have limited information on their connectivity. We developed HiCap, which …
types, we still have limited information on their connectivity. We developed HiCap, which …
Enhancer and super‐enhancer: Positive regulators in gene transcription
Y Peng, Y Zhang - Animal models and experimental medicine, 2018 - Wiley Online Library
Enhancer is a positive regulator for spatiotemporal development in eukaryotes. As a cluster,
super‐enhancer is closely related to cell identity‐and fate‐determined processes. Both of …
super‐enhancer is closely related to cell identity‐and fate‐determined processes. Both of …
Transcription factors: from enhancer binding to developmental control
F Spitz, EEM Furlong - Nature reviews genetics, 2012 - nature.com
Developmental progression is driven by specific spatiotemporal domains of gene
expression, which give rise to stereotypically patterned embryos even in the presence of …
expression, which give rise to stereotypically patterned embryos even in the presence of …
Decreased enhancer-promoter proximity accompanying enhancer activation
NS Benabdallah, I Williamson, RS Illingworth, L Kane… - Molecular cell, 2019 - cell.com
Enhancers can regulate the promoters of their target genes over very large genomic
distances. It is widely assumed that mechanisms of enhancer action involve the …
distances. It is widely assumed that mechanisms of enhancer action involve the …
[HTML][HTML] Comprehensive analysis of a cis-regulatory region reveals pleiotropy in enhancer function
Developmental genes can have complex cis-regulatory regions with multiple enhancers.
Early work revealed remarkable modularity of enhancers, whereby distinct DNA regions …
Early work revealed remarkable modularity of enhancers, whereby distinct DNA regions …
Promoter-enhancer communication occurs primarily within insulated neighborhoods
Metazoan chromosomes are sequentially partitioned into topologically associating domains
(TADs) and then into smaller sub-domains. One class of sub-domains, insulated …
(TADs) and then into smaller sub-domains. One class of sub-domains, insulated …
Complex multi-enhancer contacts captured by genome architecture mapping
The organization of the genome in the nucleus and the interactions of genes with their
regulatory elements are key features of transcriptional control and their disruption can cause …
regulatory elements are key features of transcriptional control and their disruption can cause …
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
P Freire-Pritchett, S Schoenfelder, C Várnai… - Elife, 2017 - elifesciences.org
Long-range cis-regulatory elements such as enhancers coordinate cell-specific
transcriptional programmes by engaging in DNA looping interactions with target promoters …
transcriptional programmes by engaging in DNA looping interactions with target promoters …
Remote control of gene transcription
In this review, we look at the most recent studies of DNA elements that function over long
genomic distances to regulate gene transcription and will discuss the mechanisms genes …
genomic distances to regulate gene transcription and will discuss the mechanisms genes …
3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages
D Murphy, E Salataj, DC Di Giammartino… - Nature Structural & …, 2024 - nature.com
Mammalian embryogenesis commences with two pivotal and binary cell fate decisions that
give rise to three essential lineages: the trophectoderm, the epiblast and the primitive …
give rise to three essential lineages: the trophectoderm, the epiblast and the primitive …