[HTML][HTML] Including non-additive genetic effects in Bayesian methods for the prediction of genetic values based on genome-wide markers

D Wittenburg, N Melzer, N Reinsch - BMC genetics, 2011 - Springer
Background Molecular marker information is a common source to draw inferences about the
relationship between genetic and phenotypic variation. Genetic effects are often modelled …

On the classification of epistatic interactions

H Gao, JM Granka, MW Feldman - Genetics, 2010 - academic.oup.com
Modern genomewide association studies are characterized by the problem of “missing
heritability.” Epistasis, or genetic interaction, has been suggested as a possible explanation …

[HTML][HTML] Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations

JL Gualdrón Duarte, RJC Cantet, RO Bates… - BMC …, 2014 - Springer
Background Currently, association studies are analysed using statistical mixed models, with
marker effects estimated by a linear transformation of genomic breeding values. The …

Orthogonal estimates of variances for additive, dominance, and epistatic effects in populations

ZG Vitezica, A Legarra, MA Toro, L Varona - Genetics, 2017 - academic.oup.com
Genomic prediction methods based on multiple markers have potential to include
nonadditive effects in prediction and analysis of complex traits. However, most …

Epistasis: searching for interacting genetic variants using crosses

IM Ehrenreich - Genetics, 2017 - academic.oup.com
Within quantitative genetics, the term “epistasis” is used to broadly describe situations in
which combinations of genetic variants show nonadditive phenotypic effects (Phillips 1998 …

Higher order interactions: detection of epistasis using machine learning and evolutionary computation

RM Nelson, M Kierczak, Ö Carlborg - Genome-Wide Association Studies …, 2013 - Springer
Higher order interactions are known to affect many different phenotypic traits. The advent of
large-scale genotyping has, however, shown that finding interactions is not a trivial task …

[HTML][HTML] Improving genomic prediction for seed quality traits in oat (Avena sativa L.) using trait-specific relationship matrices

MT Campbell, H Hu, TH Yeats, LJ Brzozowski… - Frontiers in …, 2021 - frontiersin.org
The observable phenotype is the manifestation of information that is passed along different
organization levels (transcriptional, translational, and metabolic) of a biological system. The …

Genome-wide association mapping reveals epistasis and genetic interaction networks in sugar beet

T Würschum, HP Maurer, B Schulz, J Möhring… - Theoretical and applied …, 2011 - Springer
Epistasis is defined as interactions between alleles of two or more genetic loci. Detection of
epistatic interactions is the key to understand the genetic architecture and gene networks …

Multi-trait improvement by predicting genetic correlations in breeding crosses

JL Neyhart, AJ Lorenz, KP Smith - G3: Genes, Genomes …, 2019 - academic.oup.com
The many quantitative traits of interest to plant breeders are often genetically correlated,
which can complicate progress from selection. Improving multiple traits may be enhanced by …

Unraveling additive from nonadditive effects using genomic relationship matrices

PR Muñoz, MFR Resende Jr, SA Gezan… - Genetics, 2014 - academic.oup.com
The application of quantitative genetics in plant and animal breeding has largely focused on
additive models, which may also capture dominance and epistatic effects. Partitioning …