[HTML][HTML] Including non-additive genetic effects in Bayesian methods for the prediction of genetic values based on genome-wide markers
D Wittenburg, N Melzer, N Reinsch - BMC genetics, 2011 - Springer
Background Molecular marker information is a common source to draw inferences about the
relationship between genetic and phenotypic variation. Genetic effects are often modelled …
relationship between genetic and phenotypic variation. Genetic effects are often modelled …
On the classification of epistatic interactions
H Gao, JM Granka, MW Feldman - Genetics, 2010 - academic.oup.com
Modern genomewide association studies are characterized by the problem of “missing
heritability.” Epistasis, or genetic interaction, has been suggested as a possible explanation …
heritability.” Epistasis, or genetic interaction, has been suggested as a possible explanation …
[HTML][HTML] Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations
JL Gualdrón Duarte, RJC Cantet, RO Bates… - BMC …, 2014 - Springer
Background Currently, association studies are analysed using statistical mixed models, with
marker effects estimated by a linear transformation of genomic breeding values. The …
marker effects estimated by a linear transformation of genomic breeding values. The …
Orthogonal estimates of variances for additive, dominance, and epistatic effects in populations
Genomic prediction methods based on multiple markers have potential to include
nonadditive effects in prediction and analysis of complex traits. However, most …
nonadditive effects in prediction and analysis of complex traits. However, most …
Epistasis: searching for interacting genetic variants using crosses
IM Ehrenreich - Genetics, 2017 - academic.oup.com
Within quantitative genetics, the term “epistasis” is used to broadly describe situations in
which combinations of genetic variants show nonadditive phenotypic effects (Phillips 1998 …
which combinations of genetic variants show nonadditive phenotypic effects (Phillips 1998 …
Higher order interactions: detection of epistasis using machine learning and evolutionary computation
Higher order interactions are known to affect many different phenotypic traits. The advent of
large-scale genotyping has, however, shown that finding interactions is not a trivial task …
large-scale genotyping has, however, shown that finding interactions is not a trivial task …
[HTML][HTML] Improving genomic prediction for seed quality traits in oat (Avena sativa L.) using trait-specific relationship matrices
The observable phenotype is the manifestation of information that is passed along different
organization levels (transcriptional, translational, and metabolic) of a biological system. The …
organization levels (transcriptional, translational, and metabolic) of a biological system. The …
Genome-wide association mapping reveals epistasis and genetic interaction networks in sugar beet
T Würschum, HP Maurer, B Schulz, J Möhring… - Theoretical and applied …, 2011 - Springer
Epistasis is defined as interactions between alleles of two or more genetic loci. Detection of
epistatic interactions is the key to understand the genetic architecture and gene networks …
epistatic interactions is the key to understand the genetic architecture and gene networks …
Multi-trait improvement by predicting genetic correlations in breeding crosses
The many quantitative traits of interest to plant breeders are often genetically correlated,
which can complicate progress from selection. Improving multiple traits may be enhanced by …
which can complicate progress from selection. Improving multiple traits may be enhanced by …
Unraveling additive from nonadditive effects using genomic relationship matrices
The application of quantitative genetics in plant and animal breeding has largely focused on
additive models, which may also capture dominance and epistatic effects. Partitioning …
additive models, which may also capture dominance and epistatic effects. Partitioning …