[HTML][HTML] Predictive ability of genome-assisted statistical models under various forms of gene action
Recent work has suggested that the performance of prediction models for complex traits may
depend on the architecture of the target traits. Here we compared several prediction models …
depend on the architecture of the target traits. Here we compared several prediction models …
The impact of non-additive effects on the genetic correlation between populations
Average effects of alleles can show considerable differences between populations. The
magnitude of these differences can be measured by the additive genetic correlation …
magnitude of these differences can be measured by the additive genetic correlation …
[HTML][HTML] A reaction norm model for genomic selection using high-dimensional genomic and environmental data
Key message New methods that incorporate the main and interaction effects of high-
dimensional markers and of high-dimensional environmental covariates gave increased …
dimensional markers and of high-dimensional environmental covariates gave increased …
[HTML][HTML] A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies
Background A central question for disease studies and crop improvements is how genetics
variants drive phenotypes. Genome Wide Association Study (GWAS) provides a powerful …
variants drive phenotypes. Genome Wide Association Study (GWAS) provides a powerful …
[HTML][HTML] Association studies including genotype by environment interactions: prospects and limits
Background Association mapping studies offer great promise to identify polymorphisms
associated with phenotypes and for understanding the genetic basis of quantitative trait …
associated with phenotypes and for understanding the genetic basis of quantitative trait …
Genetic dissection of the biotic stress response using a genome-scale gene network for rice
Rice is a staple food for one-half the world's population and a model for other
monocotyledonous species. Thus, efficient approaches for identifying key genes controlling …
monocotyledonous species. Thus, efficient approaches for identifying key genes controlling …
Genome-wide association mapping in plants
AW George, C Cavanagh - Theoretical and Applied Genetics, 2015 - Springer
Key message We present new association mapping methods which address the unique
challenges of analyzing genome-wide data from multi-environment plant studies. Abstract …
challenges of analyzing genome-wide data from multi-environment plant studies. Abstract …
[HTML][HTML] Identification of functional modules that correlate with phenotypic difference: the influence of network topology
One of the important challenges to post-genomic biology is relating observed phenotypic
alterations to the underlying collective alterations in genes. Current inferential methods …
alterations to the underlying collective alterations in genes. Current inferential methods …
BGGE: a new package for genomic-enabled prediction incorporating genotype× environment interaction models
One of the major issues in plant breeding is the occurrence of genotype× environment (GE)
interaction. Several models have been created to understand this phenomenon and explore …
interaction. Several models have been created to understand this phenomenon and explore …
[HTML][HTML] Genomic prediction with epistasis models: on the marker-coding-dependent performance of the extended GBLUP and properties of the categorical epistasis …
Background Epistasis marker effect models incorporating products of marker values as
predictor variables in a linear regression approach (extended GBLUP, EGBLUP) have been …
predictor variables in a linear regression approach (extended GBLUP, EGBLUP) have been …