Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
The DNA sequencing technologies in use today produce either highly accurate short reads
or less-accurate long reads. We report the optimization of circular consensus sequencing …
or less-accurate long reads. We report the optimization of circular consensus sequencing …
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer
Circular consensus sequencing with Pacific Biosciences (PacBio) technology generates
long (10–25 kilobases), accurate 'HiFi'reads by combining serial observations of a DNA …
long (10–25 kilobases), accurate 'HiFi'reads by combining serial observations of a DNA …
Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells
BA Peters, BG Kermani, AB Sparks, O Alferov, P Hong… - Nature, 2012 - nature.com
Recent advances in whole-genome sequencing have brought the vision of personal
genomics and genomic medicine closer to reality. However, current methods lack clinical …
genomics and genomic medicine closer to reality. However, current methods lack clinical …
Modernizing reference genome assemblies
DM Church, VA Schneider, T Graves, K Auger… - PLoS …, 2011 - journals.plos.org
The availability of a high quality human genome assembly has revolutionized biomedical
research. Genomics has now entered the realm of clinical genetics, with many groups using …
research. Genomics has now entered the realm of clinical genetics, with many groups using …
Performance comparison of whole-genome sequencing platforms
Whole-genome sequencing is becoming commonplace, but the accuracy and completeness
of variant calling by the most widely used platforms from Illumina and Complete Genomics …
of variant calling by the most widely used platforms from Illumina and Complete Genomics …
De novo assembly of a haplotype-resolved human genome
The human genome is diploid, and knowledge of the variants on each chromosome is
important for the interpretation of genomic information. Here we report the assembly of a …
important for the interpretation of genomic information. Here we report the assembly of a …
De novo genome assembly: what every biologist should know
M Baker - Nature methods, 2012 - nature.com
Asked how mature the field of genome assembly is, Ian Korf at the University of California,
Davis, compares it to a teenager with great capabilities.“It's got bold assertions about what it …
Davis, compares it to a teenager with great capabilities.“It's got bold assertions about what it …
Assembly and diploid architecture of an individual human genome via single-molecule technologies
M Pendleton, R Sebra, AWC Pang, A Ummat… - Nature …, 2015 - nature.com
We present the first comprehensive analysis of a diploid human genome that combines
single-molecule sequencing with single-molecule genome maps. Our hybrid assembly …
single-molecule sequencing with single-molecule genome maps. Our hybrid assembly …
Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly
Here we use whole-genome de novo assembly of second-generation sequencing reads to
map structural variation (SV) in an Asian genome and an African genome. Our approach …
map structural variation (SV) in an Asian genome and an African genome. Our approach …
Genome assembly comparison identifies structural variants in the human genome
R Khaja, J Zhang, JR MacDonald, Y He… - Nature …, 2006 - nature.com
Numerous types of DNA variation exist, ranging from SNPs to larger structural alterations
such as copy number variants (CNVs) and inversions. Alignment of DNA sequence from …
such as copy number variants (CNVs) and inversions. Alignment of DNA sequence from …