Candidate glioblastoma development gene identification using concordance between copy number abnormalities and gene expression level changes

KC Lo, MR Rossi, J LaDuca, DG Hicks… - Genes …, 2007 - Wiley Online Library
Copy number abnormalities (CNAs) in tumor cells are presumed to affect expression levels
of genes located in region of abnormality. To investigate this relationship we have surveyed …

[HTML][HTML] Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity …

PJ Gardina, KC Lo, W Lee, JK Cowell, Y Turpaz - BMC genomics, 2008 - Springer
Background Genomic hybridization platforms, including BAC-CGH and genotyping arrays,
have been used to estimate chromosome copy number (CN) in tumor samples by detecting …

Comprehensive analysis of loss of heterozygosity events in glioblastoma using the 100K SNP mapping arrays and comparison with copy number abnormalities …

KC Lo, D Bailey, T Burkhardt, P Gardina… - Genes …, 2008 - Wiley Online Library
We have undertaken an extensive high‐resolution analysis of loss of heterozygosity (LOH)
in 30 high grade gliomas using the Affymetrix 100K SNP mapping array. Only 70% of LOH …

Correlation analysis between single-nucleotide polymorphism and expression arrays in gliomas identifies potentially relevant target genes

Y Kotliarov, S Kotliarova, N Charong, A Li, J Walling… - Cancer research, 2009 - AACR
Primary brain tumors are a major cause of cancer mortality in the United States. Therapy for
gliomas, the most common type of primary brain tumors, remains suboptimal. The …

Integrative genome‐wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression

M Tayrac, A Etcheverry, M Aubry… - Genes …, 2009 - Wiley Online Library
Glioblastoma multiforme shows multiple chromosomal aberrations, the impact of which on
gene expression remains unclear. To investigate this relationship and to identify putative …

Microarray-based comparative genomic hybridization (array-CGH) as a useful tool for identifying genes involved in Glioblastoma (GB)

Y Ruano, M Mollejo, AR de Lope… - … : Methods and Protocols, 2010 - Springer
Alterations in the genome that lead to changes in DNA sequence copy number are a
characteristic of Glioblastomas (GBs). Microarray-based comparative genomic hybridization …

Identification of novel genomic markers related to progression to glioblastoma through genomic profiling of 25 primary glioma cell lines

G Roversi, R Pfundt, RF Moroni, I Magnani… - Oncogene, 2006 - nature.com
Identification of genetic copy number changes in glial tumors is of importance in the context
of improved/refined diagnostic, prognostic procedures and therapeutic decision-making. In …

Detection of DNA copy number abnormality by microarray expression analysis

X Zhou, SW Cole, S Hu, DTW Wong - Human genetics, 2004 - Springer
Gene copy-number abnormalities (CNAs) are characteristic of solid tumors and are found in
association with developmental abnormalities and/or mental retardation. The ultimate impact …

[HTML][HTML] Amplified and homozygously deleted genes in glioblastoma: impact on gene expression levels

I Crespo, H Tão, AB Nieto, O Rebelo, P Domingues… - 2012 - journals.plos.org
Background Glioblastoma multiforme (GBM) displays multiple amplicons and homozygous
deletions that involve relevant pathogenic genes and other genes whose role remains …

[HTML][HTML] Identification of novel candidate target genes in amplicons of Glioblastoma multiforme tumors detected by expression and CGH microarray profiling

Y Ruano, M Mollejo, T Ribalta, C Fiaño, FI Camacho… - Molecular cancer, 2006 - Springer
Background Conventional cytogenetic and comparative genomic hybridization (CGH)
studies in brain malignancies have shown that glioblastoma multiforme (GBM) is …