The pattern of DNA methylation alteration, and its association with the expression changes of non-coding RNAs and mRNAs in Moso bamboo under abiotic stress

Y Ding, LH Zou, J Wu, M Ramakrishnan, Y Gao, L Zhao… - Plant Science, 2022 - Elsevier
Epigenetic changes play an important role in plant growth and development and in stress
response. However, DNA methylation pattern and its relationship with the expression …

Insight into gene expression associated with DNA methylation and small RNA in the rhizome-root system of Moso bamboo

F Xi, Z Zhang, L Wu, B Wang, P Gao, K Chen… - International Journal of …, 2023 - Elsevier
Moso bamboo (Phyllostachys edulis), typically a monopodial scattering bamboo, is famous
for its rapid growth. The rhizome-root system of Moso bamboo plays a crucial role in its …

Whole genome bisulfite sequencing methylome analysis of mulberry (Morus alba) reveals epigenome modifications in response to drought stress

R Li, F Hu, B Li, Y Zhang, M Chen, T Fan, T Wang - Scientific Reports, 2020 - nature.com
DNA methylation plays a significant role in many biological processes. Although some
studies of DNA methylation have been performed in woody plant, none is known about the …

Single-base methylome analysis reveals dynamic changes of genome-wide DNA methylation associated with rapid stem growth of woody bamboos

LZ Niu, W Xu, PF Ma, ZH Guo, DZ Li - Planta, 2022 - Springer
Main conclusion CG and CHG methylation levels in the rapid shoot growth stages (ST2–
ST4) of woody bamboos were obviously decreased, which might regulate the internode …

Abiotic stress-induced DNA methylation in transposable elements and their transcripts reveals a multi-layered response in Moso bamboo

Y Ding, LH Zou, M Ramakrishnan, Y Chen… - Industrial Crops and …, 2024 - Elsevier
This study investigated the stress-induced epigenetic changes of transposable elements
(TEs), TE-derived long non-coding RNAs (TE-lncRNAs), and TE-derived circular RNA (TE …

Stable methylation of a non-coding RNA gene regulates gene expression in response to abiotic stress in Populus simonii

Y Song, D Ci, M Tian, D Zhang - Journal of experimental botany, 2016 - academic.oup.com
DNA methylation plays important roles in responses to environmental stimuli. However, in
perennial plants, the roles of DNA methylation in stress-specific adaptions to different abiotic …

DNA Methylation Changes and Its Associated Genes in Mulberry (Morus alba L.) Yu-711 Response to Drought Stress Using MethylRAD Sequencing

M Ackah, L Guo, S Li, X Jin, C Asakiya, ET Aboagye… - Plants, 2022 - mdpi.com
Drought stress remains one of the most detrimental environmental cues affecting plant
growth and survival. In this work, the DNA methylome changes in mulberry leaves under …

Whole‐genome characterization of chronological age‐associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative …

Z Zhang, H Wang, Y Wang, F Xi, H Wang… - The Plant …, 2021 - Wiley Online Library
In mammals, DNA methylation is associated with aging. However, age‐related DNA
methylation changes during phase transitions largely remain unstudied in plants. Moso …

Integrated Transcriptome Analysis and Single-Base Resolution Methylomes of Watermelon (Citrullus lanatus) Reveal Epigenome Modifications in Response to …

F Zhu, M Li, M Yan, F Qiao, X Jiang - Frontiers in Plant Science, 2021 - frontiersin.org
DNA methylation plays an important role against adverse environment by reshaping
transcriptional profile in plants. To better understand the molecular mechanisms of …

Single-base-resolution methylomes of populus trichocarpa reveal the association between DNA methylation and drought stress

D Liang, Z Zhang, H Wu, C Huang, P Shuai, CY Ye… - BMC genetics, 2014 - Springer
Background DNA methylation is an important biological form of epigenetic modification,
playing key roles in plant development and environmental responses. Results In this study …