[HTML][HTML] Deep mutational scans of XBB. 1.5 and BQ. 1.1 reveal ongoing epistatic drift during SARS-CoV-2 evolution
AL Taylor, TN Starr - PLoS Pathogens, 2023 - journals.plos.org
Substitutions that fix between SARS-CoV-2 variants can transform the mutational landscape
of future evolution via epistasis. For example, large epistatic shifts in mutational effects …
of future evolution via epistasis. For example, large epistatic shifts in mutational effects …
[HTML][HTML] Full-spike deep mutational scanning helps predict the evolutionary success of SARS-CoV-2 clades
B Dadonaite, J Brown, TE McMahon, AG Farrell… - bioRxiv, 2023 - ncbi.nlm.nih.gov
SARS-CoV-2 variants acquire mutations in spike that promote immune evasion and impact
other properties that contribute to viral fitness such as ACE2 receptor binding and cell entry …
other properties that contribute to viral fitness such as ACE2 receptor binding and cell entry …
[PDF][PDF] Deep mutational learning predicts ACE2 binding and antibody escape to combinatorial mutations in the SARS-CoV-2 receptor-binding domain
The continual evolution of SARS-CoV-2 and the emergence of variants that show resistance
to vaccines and neutralizing antibodies threaten to prolong the COVID-19 pandemic …
to vaccines and neutralizing antibodies threaten to prolong the COVID-19 pandemic …
[HTML][HTML] Deep mutagenesis scanning using whole trimeric SARS-CoV-2 spike highlights the importance of NTD-RBD interactions in determining spike phenotype
R Kugathasan, K Sukhova, M Moshe, P Kellam… - PLoS …, 2023 - journals.plos.org
New variants of SARS-CoV-2 are continually emerging with mutations in spike associated
with increased transmissibility and immune escape. Phenotypic maps can inform the …
with increased transmissibility and immune escape. Phenotypic maps can inform the …
[HTML][HTML] Deep mutational scans for ACE2 binding, RBD expression, and antibody escape in the SARS-CoV-2 Omicron BA. 1 and BA. 2 receptor-binding domains
SARS-CoV-2 continues to acquire mutations in the spike receptor-binding domain (RBD)
that impact ACE2 receptor binding, folding stability, and antibody recognition. Deep …
that impact ACE2 receptor binding, folding stability, and antibody recognition. Deep …
SARS-CoV-2 RBD in vitro evolution follows contagious mutation spread, yet generates an able infection inhibitor
J Zahradník, S Marciano, M Shemesh, E Zoler… - BioRxiv, 2021 - biorxiv.org
SARS-CoV-2 is continually evolving, with more contagious mutations spreading rapidly.
Using in vitro evolution to affinity maturate the receptor-binding domain (RBD) of the spike …
Using in vitro evolution to affinity maturate the receptor-binding domain (RBD) of the spike …
[HTML][HTML] Review of the mechanisms of SARS-CoV-2 evolution and transmission
The mechanism of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
evolution and transmission is elusive and its understanding, a prerequisite to forecast …
evolution and transmission is elusive and its understanding, a prerequisite to forecast …
[HTML][HTML] SARS-CoV-2 variant evolution in the United States: High accumulation of viral mutations over time likely through serial Founder Events and mutational bursts
RN Tasakis, G Samaras, A Jamison, M Lee, A Paulus… - PLoS …, 2021 - journals.plos.org
Since the first case of COVID-19 in December 2019 in Wuhan, China, SARS-CoV-2 has
spread worldwide and within a year and a half has caused 3.56 million deaths globally. With …
spread worldwide and within a year and a half has caused 3.56 million deaths globally. With …
[PDF][PDF] A selective sweep in the Spike gene has driven SARS-CoV-2 human adaptation
Summary The coronavirus disease 2019 (COVID-19) pandemic underscores the need to
better understand animal-to-human transmission of coronaviruses and adaptive evolution …
better understand animal-to-human transmission of coronaviruses and adaptive evolution …
[HTML][HTML] SARS-CoV CH. 1.1 variant: genomic and structural insight
In early February 2023, the Omicron subvariant XBB. 1.5, also known as “Kraken”,
accounted for more than 44% of new COVID-19 cases worldwide, whereas a relatively new …
accounted for more than 44% of new COVID-19 cases worldwide, whereas a relatively new …
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