Paired-end mapping reveals extensive structural variation in the human genome

JO Korbel, AE Urban, JP Affourtit, B Godwin, F Grubert… - Science, 2007 - science.org
Structural variation of the genome involves kilobase-to megabase-sized deletions,
duplications, insertions, inversions, and complex combinations of rearrangements. We …

Mapping copy number variation by population-scale genome sequencing

RE Mills, K Walter, C Stewart, RE Handsaker, K Chen… - Nature, 2011 - nature.com
Genomic structural variants (SVs) are abundant in humans, differing from other forms of
variation in extent, origin and functional impact. Despite progress in SV characterization, the …

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

Y Li, H Zheng, R Luo, H Wu, H Zhu, R Li, H Cao… - Nature …, 2011 - nature.com
Here we use whole-genome de novo assembly of second-generation sequencing reads to
map structural variation (SV) in an Asian genome and an African genome. Our approach …

Genome assembly comparison identifies structural variants in the human genome

R Khaja, J Zhang, JR MacDonald, Y He… - Nature …, 2006 - nature.com
Numerous types of DNA variation exist, ranging from SNPs to larger structural alterations
such as copy number variants (CNVs) and inversions. Alignment of DNA sequence from …

[HTML][HTML] A human genome structural variation sequencing resource reveals insights into mutational mechanisms

JM Kidd, T Graves, TL Newman, R Fulton, HS Hayden… - Cell, 2010 - cell.com
Understanding the prevailing mutational mechanisms responsible for human genome
structural variation requires uniformity in the discovery of allelic variants and precision in …

Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library

HYK Lam, XJ Mu, AM Stütz, A Tanzer, PD Cayting… - Nature …, 2010 - nature.com
Structural variants (SVs) are a major source of human genomic variation; however,
characterizing them at nucleotide resolution remains challenging. Here we assemble a …

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin… - Science, 2021 - science.org
INTRODUCTION The characterization of the full spectrum of genetic variation is critical to
understanding human health and disease. Recent technological advances have made it …

Genome maps across 26 human populations reveal population-specific patterns of structural variation

M Levy-Sakin, S Pastor, Y Mostovoy, L Li… - Nature …, 2019 - nature.com
Large structural variants (SVs) in the human genome are difficult to detect and study by
conventional sequencing technologies. With long-range genome analysis platforms, such as …

Multi-platform discovery of haplotype-resolved structural variation in human genomes

MJP Chaisson, AD Sanders, X Zhao, A Malhotra… - Nature …, 2019 - nature.com
The incomplete identification of structural variants (SVs) from whole-genome sequencing
data limits studies of human genetic diversity and disease association. Here, we apply a …

Characterization of missing human genome sequences and copy-number polymorphic insertions

JM Kidd, N Sampas, F Antonacci, T Graves, R Fulton… - Nature …, 2010 - nature.com
The extent of human genomic structural variation suggests that there must be portions of the
genome yet to be discovered, annotated and characterized at the sequence level. We …