Single-Cell Transcriptomics Reveals Splicing Features of Adult Neural Stem Cells in the Subventricular Zone

Y Wang, C Li, X Gong, X Chen, C Liu… - Frontiers in Cell and …, 2022 - frontiersin.org
The central nervous system has enormously complex cellular diversity with hundreds of
distinct cell types, yet alternative splicing features in single cells of important cell types at …

[HTML][HTML] Single-cell long-read sequencing in human cerebral organoids uncovers cell-type-specific and autism-associated exons

Y Yang, R Yang, B Kang, S Qian, X He, X Zhang - Cell reports, 2023 - cell.com
Dysregulation of alternative splicing has been repeatedly associated with
neurodevelopmental disorders, but the extent of cell-type-specific splicing in human neural …

Robust and annotation-free analysis of alternative splicing across diverse cell types in mice

G Benegas, J Fischer, YS Song - Elife, 2022 - elifesciences.org
Although alternative splicing is a fundamental and pervasive aspect of gene expression in
higher eukaryotes, it is often omitted from single-cell studies due to quantification challenges …

Complexity and graded regulation of neuronal cell-type–specific alternative splicing revealed by single-cell RNA sequencing

H Feng, DF Moakley, S Chen… - Proceedings of the …, 2021 - National Acad Sciences
The enormous cellular diversity in the mammalian brain, which is highly prototypical and
organized in a hierarchical manner, is dictated by cell-type–specific gene-regulatory …

FACS-Based Neuronal Cell Type–Specific RNA Isolation and Alternative Splicing Analysis

Z Wei, Y Qin, G Fishell, B Li - Alternative Splicing: Methods and Protocols, 2022 - Springer
Alternative splicing of pre-mRNAs expands the coding abilities of genomes by generating
distinct transcription variants from individual genes. It contributes to the marvelous …

Deep Transcriptomics Reveals Cell-Specific Isoforms of Pan-Neuronal Genes

Z Wolfe, D Liska, AD Norris - bioRxiv, 2024 - biorxiv.org
Profiling gene expression in single neurons using single-cell RNA-Seq is a powerful method
for understanding the molecular diversity of the nervous system. Profiling alternative splicing …

Cortexa-a comprehensive resource for studying gene expression and alternative splicing in the murine brain.

S Weissbach, J Milkovits, S Pastore, M Heine, S Gerber… - bioRxiv, 2024 - biorxiv.org
Motivation: Gene expression and alternative splicing are strictly regulated processes that
shape brain development and determine the cellular identity of differentiated neural cell …

Single-cell alternative splicing analysis with expedition reveals splicing dynamics during neuron differentiation

Y Song, OB Botvinnik, MT Lovci, B Kakaradov, P Liu… - Molecular cell, 2017 - cell.com
Alternative splicing (AS) generates isoform diversity for cellular identity and homeostasis in
multicellular life. Although AS variation has been observed among single cells, little is …

Characterization of Alternative Splicing During Mammalian Brain Development Reveals the Magnitude of Isoform Diversity and its Effects on Protein Conformational …

L Haj Abdullah Alieh, B Cardoso de Toledo… - bioRxiv, 2023 - biorxiv.org
Regulation of gene expression is critical for fate commitment of stem and progenitor cells
during tissue formation. In the context of mammalian brain development, a plethora of …

Comprehensive analysis of alternative splicing and functionality in neuronal differentiation of P19 cells

H Suzuki, K Osaki, K Sano, AHMK Alam, Y Nakamura… - PLoS …, 2011 - journals.plos.org
Background Alternative splicing, which produces multiple mRNAs from a single gene,
occurs in most human genes and contributes to protein diversity. Many alternative isoforms …