The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation
Background Silencing of transposable elements (TEs) is essential for maintaining genome
stability. Plants use small RNAs (sRNAs) to direct DNA methylation to TEs (RNA-directed …
stability. Plants use small RNAs (sRNAs) to direct DNA methylation to TEs (RNA-directed …
On the coevolution of transposable elements and plant genomes
P Civáň, M Švec, P Hauptvogel - Journal of Botany, 2011 - Wiley Online Library
Plant genomes are unique in an intriguing feature: the range of their size variation is
unprecedented among living organisms. Although polyploidization contributes to this …
unprecedented among living organisms. Although polyploidization contributes to this …
Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi
Transposable elements (TEs) are ubiquitous inhabitants of eukaryotic genomes and their
proliferation and dispersal shape genome architectures and diversity. Nevertheless, TE …
proliferation and dispersal shape genome architectures and diversity. Nevertheless, TE …
Transposable elements: major players in shaping genomic and evolutionary patterns
N Colonna Romano, L Fanti - Cells, 2022 - mdpi.com
Transposable elements (TEs) are ubiquitous genetic elements, able to jump from one
location of the genome to another, in all organisms. For this reason, on the one hand, TEs …
location of the genome to another, in all organisms. For this reason, on the one hand, TEs …
Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes
C Feschotte, U Keswani, N Ranganathan… - Genome biology and …, 2009 - academic.oup.com
Eukaryotic genomes contain large amount of repetitive DNA, most of which is derived from
transposable elements (TEs). Progress has been made to develop computational tools for …
transposable elements (TEs). Progress has been made to develop computational tools for …
All families of transposable elements were active in the recent wheat genome evolution and polyploidy had no impact on their activity
N Papon, P Lasserre‐Zuber, H Rimbert… - The Plant …, 2023 - Wiley Online Library
Bread wheat (Triticum aestivum L.) is a major crop and its genome is one of the largest ever
assembled at reference‐quality level. It is 15 Gb, hexaploid, with 85% of transposable …
assembled at reference‐quality level. It is 15 Gb, hexaploid, with 85% of transposable …
Transposable Elements Contribute to the Adaptation of Arabidopsis thaliana
ZW Li, XH Hou, JF Chen, YC Xu, Q Wu… - Genome Biology and …, 2018 - academic.oup.com
Transposable elements (TEs) are mobile genetic elements with very high mutation rates that
play important roles in shaping genome architecture and regulating phenotypic variation …
play important roles in shaping genome architecture and regulating phenotypic variation …
Starships: a new frontier for fungal biology
Transposable elements (TEs) are semiautonomous genetic entities that proliferate in
genomes. We recently discovered the Starships, a previously hidden superfamily of giant …
genomes. We recently discovered the Starships, a previously hidden superfamily of giant …
Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts
Highlights•Hairpin structures may be important for host recognition of TE mRNAs.•TE cis-
regulatory regions may be the location of arms-races with host defenses.•Old, silenced TEs …
regulatory regions may be the location of arms-races with host defenses.•Old, silenced TEs …
Genomic environments and their influence on transposable element communities
Background Despite decades of research the factors that cause differences in transposable
element (TE) distribution and abundance within and between genomes are still unclear …
element (TE) distribution and abundance within and between genomes are still unclear …