The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

J Sperschneider, AW Jones, J Nasim, B Xu, S Jacques… - BMC biology, 2021 - Springer
Background Silencing of transposable elements (TEs) is essential for maintaining genome
stability. Plants use small RNAs (sRNAs) to direct DNA methylation to TEs (RNA-directed …

On the coevolution of transposable elements and plant genomes

P Civáň, M Švec, P Hauptvogel - Journal of Botany, 2011 - Wiley Online Library
Plant genomes are unique in an intriguing feature: the range of their size variation is
unprecedented among living organisms. Although polyploidization contributes to this …

Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi

J Hess, I Skrede, BE Wolfe, K LaButti… - Genome Biology and …, 2014 - academic.oup.com
Transposable elements (TEs) are ubiquitous inhabitants of eukaryotic genomes and their
proliferation and dispersal shape genome architectures and diversity. Nevertheless, TE …

Transposable elements: major players in shaping genomic and evolutionary patterns

N Colonna Romano, L Fanti - Cells, 2022 - mdpi.com
Transposable elements (TEs) are ubiquitous genetic elements, able to jump from one
location of the genome to another, in all organisms. For this reason, on the one hand, TEs …

Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes

C Feschotte, U Keswani, N Ranganathan… - Genome biology and …, 2009 - academic.oup.com
Eukaryotic genomes contain large amount of repetitive DNA, most of which is derived from
transposable elements (TEs). Progress has been made to develop computational tools for …

All families of transposable elements were active in the recent wheat genome evolution and polyploidy had no impact on their activity

N Papon, P Lasserre‐Zuber, H Rimbert… - The Plant …, 2023 - Wiley Online Library
Bread wheat (Triticum aestivum L.) is a major crop and its genome is one of the largest ever
assembled at reference‐quality level. It is 15 Gb, hexaploid, with 85% of transposable …

Transposable Elements Contribute to the Adaptation of Arabidopsis thaliana

ZW Li, XH Hou, JF Chen, YC Xu, Q Wu… - Genome Biology and …, 2018 - academic.oup.com
Transposable elements (TEs) are mobile genetic elements with very high mutation rates that
play important roles in shaping genome architecture and regulating phenotypic variation …

Starships: a new frontier for fungal biology

A Urquhart, AA Vogan, E Gluck-Thaler - Trends in Genetics, 2024 - cell.com
Transposable elements (TEs) are semiautonomous genetic entities that proliferate in
genomes. We recently discovered the Starships, a previously hidden superfamily of giant …

Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts

A Bousios, BS Gaut - Current opinion in plant biology, 2016 - Elsevier
Highlights•Hairpin structures may be important for host recognition of TE mRNAs.•TE cis-
regulatory regions may be the location of arms-races with host defenses.•Old, silenced TEs …

Genomic environments and their influence on transposable element communities

B Saylor, SC Kremer, TR Gregory, K Cottenie - bioRxiv, 2019 - biorxiv.org
Background Despite decades of research the factors that cause differences in transposable
element (TE) distribution and abundance within and between genomes are still unclear …