Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project
MK Konkel, JA Walker, AB Hotard… - Genome biology and …, 2015 - academic.oup.com
The goal of the 1000 Genomes Consortium is to characterize human genome structural
variation (SV), including forms of copy number variations such as deletions, duplications …
variation (SV), including forms of copy number variations such as deletions, duplications …
Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations
DJ Witherspoon, Y Zhang, J Xing, WS Watkins… - Genome …, 2013 - genome.cshlp.org
Alu retrotransposons are the most numerous and active mobile elements in humans,
causing genetic disease and creating genomic diversity. Mobile element scanning (ME …
causing genetic disease and creating genomic diversity. Mobile element scanning (ME …
Alu repeat discovery and characterization within human genomes
Human genomes are now being rapidly sequenced, but not all forms of genetic variation are
routinely characterized. In this study, we focus on Alu retrotransposition events and seek to …
routinely characterized. In this study, we focus on Alu retrotransposition events and seek to …
Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity
ML Carroll, AM Roy-Engel, SV Nguyen… - Journal of molecular …, 2001 - Elsevier
We have utilized computational biology to screen GenBank for the presence of recently
integrated Ya5 and Yb8 Alu family members. Our analysis identified 2640 Ya5 Alu family …
integrated Ya5 and Yb8 Alu family members. Our analysis identified 2640 Ya5 Alu family …
Discovery and characterization of Alu repeat sequences via precise local read assembly
JH Wildschutte, A Baron, NM Diroff… - Nucleic acids …, 2015 - academic.oup.com
Alu insertions have contributed to> 11% of the human genome and∼ 30–35 Alu subfamilies
remain actively mobile, yet the characterization of polymorphic Alu insertions from short-read …
remain actively mobile, yet the characterization of polymorphic Alu insertions from short-read …
Potential gene conversion and source genes for recently integrated Alu elements
AM Roy, ML Carroll, SV Nguyen, AH Salem… - Genome …, 2000 - genome.cshlp.org
Alu elements comprise> 10% of the human genome. We have used a computational biology
approach to analyze the human genomic DNA sequence databases to determine the impact …
approach to analyze the human genomic DNA sequence databases to determine the impact …
Recently integrated Alu retrotransposons are essentially neutral residents of the human genome
Alu elements represent the largest family of human mobile elements in copy number. A
controversial issue with implications for both Alu biology and human genome evolution is …
controversial issue with implications for both Alu biology and human genome evolution is …
Recent Insertion of an Alu Element Within a Polymorphic Human-Specific Alu Insertion
Alu elements are a family of short interspersed repeats that have mobilized throughout
primate genomes by retrotransposition over the past 65 Myr of primate evolution (for a …
primate genomes by retrotransposition over the past 65 Myr of primate evolution (for a …
Estimating the retrotransposition rate of human Alu elements
Mobile elements such as Alu repeats have substantially altered the architecture of the
human genome, and de novo mobile element insertions sometimes cause genetic …
human genome, and de novo mobile element insertions sometimes cause genetic …
Genetic and epigenetic variations contributed by Alu retrotransposition
A de Andrade, M Wang, MF Bonaldo, H Xie, MB Soares - BMC genomics, 2011 - Springer
Background De novo retrotransposition of Alu elements has been recognized as a major
driver for insertion polymorphisms in human populations. In this study, we exploited Alu …
driver for insertion polymorphisms in human populations. In this study, we exploited Alu …