13C Isotope-Labeled Metabolomes Allowing for Improved Compound Annotation and Relative Quantification in Liquid Chromatography-Mass Spectrometry-based …

P Giavalisco, K Köhl, J Hummel, B Seiwert… - Analytical …, 2009 - ACS Publications
Metabolomics is rapidly becoming an integral part of many life science studies ranging from
disease diagnostics to systems biology. However, a number of problems such as the …

CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets

C Kuhl, R Tautenhahn, C Bottcher, TR Larson… - Analytical …, 2012 - ACS Publications
Liquid chromatography coupled to mass spectrometry is routinely used for metabolomics
experiments. In contrast to the fairly routine and automated data acquisition steps …

[HTML][HTML] MetaboSearch: tool for mass-based metabolite identification using multiple databases

B Zhou, J Wang, HW Ressom - PLoS One, 2012 - journals.plos.org
Searching metabolites against databases according to their masses is often the first step in
metabolite identification for a mass spectrometry-based untargeted metabolomics study …

[HTML][HTML] A modular and expandable ecosystem for metabolomics data annotation in R

J Rainer, A Vicini, L Salzer, J Stanstrup, JM Badia… - Metabolites, 2022 - mdpi.com
Liquid chromatography-mass spectrometry (LC-MS)-based untargeted metabolomics
experiments have become increasingly popular because of the wide range of metabolites …

[PDF][PDF] High resolution mass spectrometry improves data quantity and quality as compared to unit mass resolution mass spectrometry in high-throughput profiling …

AM Evans, BR Bridgewater, Q Liu, MW Mitchell… - …, 2014 - researchgate.net
Metabolomics is a technique in which the small molecule component from a biological
source material is analyzed for changes resulting from some set of test conditions. Liquid …

High-throughput discovery metabolomics

T Fuhrer, N Zamboni - Current opinion in biotechnology, 2015 - Elsevier
Highlights•Chromatography-based mass spectrometry (MS) allows profiling 100 samples
per day.•Thousands of samples per day can be efficiently analyzed by omitting …

[HTML][HTML] Advances in decomposing complex metabolite mixtures using substructure-and network-based computational metabolomics approaches

MA Beniddir, KB Kang, G Genta-Jouve, F Huber… - Natural product …, 2021 - pubs.rsc.org
Covering: up to the end of 2020 Recently introduced computational metabolome mining
tools have started to positively impact the chemical and biological interpretation of …

Mass spectrometry‐based holistic analytical approaches for metabolite profiling in systems biology studies

G Theodoridis, HG Gika… - Mass spectrometry reviews, 2011 - Wiley Online Library
Metabonomics and metabolomics represent one of the three major platforms in systems
biology. To perform metabolomics it is necessary to generate comprehensive “global” …

[HTML][HTML] Human metabolomics: strategies to understand biology

R Ramautar, R Berger, J van der Greef… - Current opinion in …, 2013 - Elsevier
Highlights•Metabolomics provides a functional read-out of the physiological status of an
organism.•A precise (dynamic) description of the clinical phenotype is missing for complex …

[HTML][HTML] Automated label-free quantification of metabolites from liquid chromatography–mass spectrometry data

E Kenar, H Franken, S Forcisi, K Wörmann… - Molecular & Cellular …, 2014 - ASBMB
Liquid chromatography coupled to mass spectrometry (LC-MS) has become a standard
technology in metabolomics. In particular, label-free quantification based on LC-MS is easily …