Distribution of the phenotypic effects of random homologous recombination between two virus species

F Vuillaume, G Thébaud, C Urbino, N Forfert… - PLoS …, 2011 - journals.plos.org
Recombination has an evident impact on virus evolution and emergence of new pathotypes,
and has generated an immense literature. However, the distribution of phenotypic effects …

Avoidance of protein fold disruption in natural virus recombinants

P Lefeuvre, JM Lett, B Reynaud, DP Martin - PLoS Pathogens, 2007 - journals.plos.org
With the development of reliable recombination detection tools and an increasing number of
available genome sequences, many studies have reported evidence of recombination in a …

Complex recombination patterns arising during geminivirus coinfections preserve and demarcate biologically important intra-genome interaction networks

DP Martin, P Lefeuvre, A Varsani, M Hoareau… - PLoS …, 2011 - journals.plos.org
Genetic recombination is an important process during the evolution of many virus species
and occurs particularly frequently amongst begomoviruses in the single stranded DNA virus …

The role of extensive recombination in the evolution of geminiviruses

E Fiallo-Olivé, J Navas-Castillo - Viral Fitness and Evolution: Population …, 2023 - Springer
Mutation, recombination and pseudo-recombination are the major forces driving the
evolution of viruses by the generation of variants upon which natural selection, genetic drift …

Detection and frequency of recombination in tomato-infecting begomoviruses of South and Southeast Asia

HC Prasanna, M Rai - Virology Journal, 2007 - Springer
Background Tomato-infecting begomoviruses are widely distributed across the world and
cause diseases of high economic impact on wide range of agriculturally important crops …

Possible emergence of new geminiviruses by frequent recombination

M Padidam, S Sawyer, CM Fauquet - Virology, 1999 - Elsevier
Although exchange of genetic information by recombination plays a role in the evolution of
viruses, the extent to which it generates diversity is not clear. We analyzed genomes of …

The diversification of begomovirus populations is predominantly driven by mutational dynamics

ATM Lima, JCF Silva, FN Silva… - Virus …, 2017 - academic.oup.com
Begomoviruses (single-stranded DNA plant viruses) are responsible for serious agricultural
threats. Begomovirus populations exhibit a high degree of within-host genetic variation and …

Recombination every day: abundant recombination in a virus during a single multi-cellular host infection

R Froissart, D Roze, M Uzest, L Galibert, S Blanc… - PLoS …, 2005 - journals.plos.org
Viral recombination can dramatically impact evolution and epidemiology. In viruses, the
recombination rate depends on the frequency of genetic exchange between different viral …

Reassortments in single-stranded DNA multipartite viruses: Confronting expectations based on molecular constraints with field observations

B Torralba, S Blanc, Y Michalakis - Virus Evolution, 2024 - academic.oup.com
Single-stranded DNA multipartite viruses, which mostly consist of members of the genus
Begomovirus, family Geminiviridae, and all members of the family Nanoviridae, partly …

Application of motif-based tools on evolutionary analysis of multipartite single-stranded DNA viruses

HI Wang, CH Chang, PH Lin, HC Fu, CY Tang… - PLoS …, 2013 - journals.plos.org
Multipartite viruses contain more than one distinctive genome component, and the origin of
multipartite viruses has been suggested to evolve from a non-segmented wild-type virus. To …