Transcriptome-based prediction of complex traits in maize

CB Azodi, J Pardo, R VanBuren… - The Plant …, 2020 - academic.oup.com
The ability to predict traits from genome-wide sequence information (ie, genomic prediction)
has improved our understanding of the genetic basis of complex traits and transformed …

Evaluation of the utility of gene expression and metabolic information for genomic prediction in maize

Z Guo, MM Magwire, CJ Basten, Z Xu… - Theoretical and applied …, 2016 - Springer
Abstract Key Message Predictive ability derived from gene expression and metabolic
information was evaluated using genomic prediction methods based on datasets from a …

Genomic prediction of maize microphenotypes provides insights for optimizing selection and mining diversity

X Yu, S Leiboff, X Li, T Guo, N Ronning… - Plant Biotechnology …, 2020 - Wiley Online Library
Effective evaluation of millions of crop genetic stocks is an essential component of exploiting
genetic diversity to achieve global food security. By leveraging genomics and data analytics …

Phenomic data-driven biological prediction of maize through field-based high-throughput phenotyping integration with genomic data

A Adak, M Kang, SL Anderson… - Journal of …, 2023 - academic.oup.com
High-throughput phenotyping (HTP) has expanded the dimensionality of data in plant
research; however, HTP has resulted in few novel biological discoveries to date. Field …

Benchmarking parametric and machine learning models for genomic prediction of complex traits

CB Azodi, E Bolger, A McCarren… - G3: Genes …, 2019 - academic.oup.com
The usefulness of genomic prediction in crop and livestock breeding programs has
prompted efforts to develop new and improved genomic prediction algorithms, such as …

[HTML][HTML] Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines

C Riedelsheimer, F Technow, AE Melchinger - BMC genomics, 2012 - Springer
Background There is increasing empirical evidence that whole-genome prediction (WGP) is
a powerful tool for predicting line and hybrid performance in maize. However, there is a lack …

Omics-based hybrid prediction in maize

M Westhues, TA Schrag, C Heuer, G Thaller… - Theoretical and applied …, 2017 - Springer
Key message Complementing genomic data with other “omics” predictors can increase the
probability of success for predicting the best hybrid combinations using complex agronomic …

[HTML][HTML] Genomic prediction models for traits differing in heritability for soybean, rice, and maize

AS Kaler, LC Purcell, T Beissinger, JD Gillman - BMC plant biology, 2022 - Springer
Background Genomic selection is a powerful tool in plant breeding. By building a prediction
model using a training set with markers and phenotypes, genomic estimated breeding …

Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize

TA Schrag, M Westhues, W Schipprack, F Seifert… - Genetics, 2018 - academic.oup.com
The ability to predict the agronomic performance of single-crosses with high precision is
essential for selecting superior candidates for hybrid breeding. With recent technological …

Genome‐wide atlas of transcription during maize development

RS Sekhon, H Lin, KL Childs, CN Hansey… - The Plant …, 2011 - Wiley Online Library
Maize is an important model species and a major constituent of human and animal diets. It
has also emerged as a potential feedstock and model system for bioenergy research due to …