[HTML][HTML] Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data
H Tong, Z Nikoloski - Journal of plant physiology, 2021 - Elsevier
Highly efficient and accurate selection of elite genotypes can lead to dramatic shortening of
the breeding cycle in major crops relevant for sustaining present demands for food, feed …
the breeding cycle in major crops relevant for sustaining present demands for food, feed …
Genome‐wide Transcription Factor Gene Prediction and their Expressional Tissue‐Specificities in MaizeF
Transcription factors (TFs) are important regulators of gene expression. To better understand
TF‐encoding genes in maize (Zea mays L.), a genome‐wide TF prediction was performed …
TF‐encoding genes in maize (Zea mays L.), a genome‐wide TF prediction was performed …
Whole transcriptome profiling of maize during early somatic embryogenesis reveals altered expression of stress factors and embryogenesis-related genes
Embryogenic tissue culture systems are utilized in propagation and genetic engineering of
crop plants, but applications are limited by genotype-dependent culture response. To date …
crop plants, but applications are limited by genotype-dependent culture response. To date …
Harnessing genetic diversity in the USDA pea germplasm collection through genomic prediction
Phenotypic evaluation and efficient utilization of germplasm collections can be time-
intensive, laborious, and expensive. However, with the plummeting costs of next-generation …
intensive, laborious, and expensive. However, with the plummeting costs of next-generation …
Utility of climatic information via combining ability models to improve genomic prediction for yield within the genomes to fields maize project
Genomic prediction provides an efficient alternative to conventional phenotypic selection for
developing improved cultivars with desirable characteristics. New and improved methods to …
developing improved cultivars with desirable characteristics. New and improved methods to …
Predictive breeding for maize: Making use of molecular phenotypes, machine learning, and physiological crop models
Maize (Zea mays L.) has been a focus of scientific research and breeding for over a century.
It is also one of the most economically important crops in the world, with a value of …
It is also one of the most economically important crops in the world, with a value of …
Multi-trait Genomic Prediction Model Increased the Predictive Ability for Agronomic and Malting Quality Traits in Barley (Hordeum vulgare L.)
M Bhatta, L Gutierrez, L Cammarota… - G3: Genes …, 2020 - academic.oup.com
Plant breeders regularly evaluate multiple traits across multiple environments, which opens
an avenue for using multiple traits in genomic prediction models. We assessed the potential …
an avenue for using multiple traits in genomic prediction models. We assessed the potential …
A multi-omics integrative network map of maize
L Han, W Zhong, J Qian, M Jin, P Tian, W Zhu… - Nature …, 2023 - nature.com
Networks are powerful tools to uncover functional roles of genes in phenotypic variation at a
system-wide scale. Here, we constructed a maize network map that contains the genomic …
system-wide scale. Here, we constructed a maize network map that contains the genomic …
Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays
Transcriptome analysis is a valuable tool for identification and characterization of genes and
pathways underlying plant growth and development. We previously published a microarray …
pathways underlying plant growth and development. We previously published a microarray …
Threshold models for genome-enabled prediction of ordinal categorical traits in plant breeding
OA Montesinos-López… - G3: Genes …, 2015 - academic.oup.com
Categorical scores for disease susceptibility or resistance often are recorded in plant
breeding. The aim of this study was to introduce genomic models for analyzing ordinal …
breeding. The aim of this study was to introduce genomic models for analyzing ordinal …