Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool
The response of the global virus genomics community to the severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) pandemic has been unprecedented, with significant …
syndrome coronavirus 2 (SARS-CoV-2) pandemic has been unprecedented, with significant …
Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences
Background More than 2 million SARS-CoV-2 genome sequences have been generated
and shared since the start of the COVID-19 pandemic and constitute a vital information …
and shared since the start of the COVID-19 pandemic and constitute a vital information …
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
The ongoing pandemic spread of a new human coronavirus, SARS-CoV-2, which is
associated with severe pneumonia/disease (COVID-19), has resulted in the generation of …
associated with severe pneumonia/disease (COVID-19), has resulted in the generation of …
Comparative genomics reveals early emergence and biased spatiotemporal distribution of SARS-CoV-2
Effective systems for the analysis of molecular data are fundamental for monitoring the
spread of infectious diseases and studying pathogen evolution. The rapid identification of …
spread of infectious diseases and studying pathogen evolution. The rapid identification of …
Phylogenetic analysis of SARS-CoV-2 data is difficult
Numerous studies covering some aspects of SARS-CoV-2 data analyses are being
published on a daily basis, including a regularly updated phylogeny on nextstrain. org. Here …
published on a daily basis, including a regularly updated phylogeny on nextstrain. org. Here …
Mapping genome variation of SARS-CoV-2 worldwide highlights the impact of COVID-19 super-spreaders
A Gómez-Carballa, X Bello, J Pardo-Seco… - Genome …, 2020 - genome.cshlp.org
The human pathogen severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is
responsible for the major pandemic of the twenty-first century. We analyzed more than 4700 …
responsible for the major pandemic of the twenty-first century. We analyzed more than 4700 …
A framework for automated scalable designation of viral pathogen lineages from genomic data
J McBroome, A de Bernardi Schneider, C Roemer… - Nature …, 2024 - nature.com
Pathogen lineage nomenclature systems are a key component of effective communication
and collaboration for researchers and public health workers. Since February 2021, the …
and collaboration for researchers and public health workers. Since February 2021, the …
A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages
Since the start of the COVID-19 pandemic, an unprecedented number of genomic
sequences of SARS-CoV-2 have been generated and shared with the scientific community …
sequences of SARS-CoV-2 have been generated and shared with the scientific community …
[HTML][HTML] One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages
F González-Candelas, MA Shaw, T Phan… - Infection, Genetics and …, 2021 - Elsevier
The COVID-19 pandemic was officially declared on March 11 th, 2020. Since the very
beginning, the spread of the virus has been tracked nearly in real-time by worldwide …
beginning, the spread of the virus has been tracked nearly in real-time by worldwide …
Phylogenetic network analysis of SARS-CoV-2 genomes
P Forster, L Forster, C Renfrew… - Proceedings of the …, 2020 - National Acad Sciences
In a phylogenetic network analysis of 160 complete human severe acute respiratory
syndrome coronavirus 2 (SARS-Cov-2) genomes, we find three central variants …
syndrome coronavirus 2 (SARS-Cov-2) genomes, we find three central variants …