Systematic search in conformational analysis

DD Beusen, EFB Shands, SF Karasek… - Journal of Molecular …, 1996 - Elsevier
The coupling of conformation to activity and reactivity is a widely accepted concept, and as
such has driven the development of tools which execute conformational searches in rapid …

[引用][C] A survey of methods for searching the conformational space of small and medium‐sized molecules

AR Leach - Reviews in computational chemistry, 1991 - Wiley Online Library
This chapter contains sections titled: Introduction Systematic Search Methods Model
Building Approaches and Symbolic Representations of Conformation Random Search …

An internal-coordinate Monte Carlo method for searching conformational space

G Chang, WC Guida, WC Still - Journal of the American Chemical …, 1989 - ACS Publications
An internal coordinate, random-search method for finding the low-energy conformations of
organic molecules is described. The search is biased toward the low-energy regions of …

Automated conformational analysis: directed conformational search using the A* algorithm

AR Leach, K Prout - Journal of computational chemistry, 1990 - Wiley Online Library
A common requirement in conformational analysis is the identification of a molecule's lowest
energy conformations. The application of the A* algorithm to this problem is examined. The …

Conformational searching methods for small molecules. I. Study of the sybyl search method

AK Ghose, EP Jaeger, PJ Kowalczyk… - Journal of …, 1993 - Wiley Online Library
Several methods are available in the literature for the conformational analysis of small
molecules. Each of these methods has some advantages and some disadvantages. Also …

An analytic ring closure condition for geometrical algorithm to search the conformational space

LN Santagata, FD Suvire, RD Enriz - Journal of Molecular Structure …, 2000 - Elsevier
The recently reported geometrical algorithm to search the conformational space (GASCOS)
scans conformational space exhaustively using an internal coordinate tree search. Using …

Conformational searching methods for small molecules. III. Study of stochastic methods available in SYBYL and MACROMODEL

AM Treasurywala, EP Jaeger… - Journal of computational …, 1996 - Wiley Online Library
In a continuing effort to provide the computational community with a reference work
comparing all of the available conformer searching methods, we have exposed the standard …

Direct search methods for the molecular conformation problem

JC Meza, ML Martinez - Journal of Computational Chemistry, 1994 - Wiley Online Library
An important area of research in computational biochemistry is the design of molecules for
specific applications. The design of these molecules, which depends on the accurate …

Optimization of a genetic algorithm for searching molecular conformer space

ZE Brain, MA Addicoat - The Journal of chemical physics, 2011 - pubs.aip.org
We present two sets of tunings that are broadly applicable to conformer searches of isolated
molecules using a genetic algorithm (GA). In order to find the most efficient tunings for the …

WIZARD: AI in conformational analysis

DP Dolata, AR Leach, K Prout - Journal of Computer-Aided Molecular …, 1987 - Springer
A program which utilizes the techniques of Artificial Intelligence and Expert Systems to solve
problems in the area of Conformational Analysis is described. The program searches …